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PDBsum entry 1upc
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Tunnel analysis for: 1upc calculated with  MOLE 2.0
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PDB id
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1upc
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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25 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.74 |
1.94 |
37.1 |
-0.36 |
-0.05 |
10.8 |
79 |
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3 |
3 |
4 |
6 |
6 |
0 |
0 |
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TPP 600 F SO4 602 F
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2 |
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1.16 |
1.64 |
62.9 |
-0.24 |
-0.03 |
9.4 |
76 |
5 |
2 |
2 |
10 |
8 |
0 |
0 |
TPP 600 F SO4 602 F
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3 |
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1.44 |
1.57 |
16.8 |
-0.37 |
-0.21 |
8.7 |
95 |
2 |
0 |
1 |
5 |
0 |
0 |
0 |
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4 |
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1.38 |
1.71 |
17.8 |
-0.01 |
-0.08 |
7.7 |
91 |
2 |
0 |
1 |
6 |
0 |
0 |
0 |
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5 |
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1.35 |
1.51 |
22.1 |
-0.64 |
-0.46 |
10.6 |
85 |
1 |
1 |
0 |
3 |
0 |
1 |
0 |
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6 |
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1.45 |
1.56 |
16.8 |
-0.53 |
-0.36 |
11.0 |
85 |
1 |
1 |
0 |
3 |
0 |
1 |
0 |
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7 |
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1.43 |
1.60 |
20.4 |
-0.18 |
-0.12 |
9.1 |
92 |
2 |
0 |
1 |
7 |
0 |
0 |
0 |
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8 |
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1.39 |
1.50 |
19.8 |
-0.38 |
-0.20 |
8.8 |
91 |
2 |
0 |
1 |
6 |
0 |
0 |
0 |
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9 |
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1.31 |
1.61 |
15.3 |
-0.72 |
-0.37 |
13.2 |
85 |
1 |
1 |
0 |
3 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program