PDBsum entry 1t3d Go to PDB code:  Pore analysis for: 1t3d calculated with MOLE 2.0 PDB id 1t3d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.36 30.9 -1.05 -0.25 17.9 84 5 4 4 4 1 0 0   2 1.32 1.44 32.5 -0.70 -0.24 14.8 85 4 5 4 5 1 0 0   3 1.26 1.33 36.3 -1.20 -0.43 19.1 85 4 3 4 4 0 0 0  MSE 155 C MSE 254 C MSE 256 C 4 1.33 1.34 92.0 -1.37 -0.34 20.6 83 5 4 5 6 1 0 1  MSE 1 A MSE 155 A MSE 254 A MSE 256 A 5 1.29 1.47 95.3 -1.60 -0.48 23.3 81 6 9 6 6 0 1 2  MSE 1 B MSE 155 B MSE 254 B MSE 256 B 6 1.48 1.54 96.6 -1.43 -0.31 20.4 81 8 4 5 6 2 1 1  MSE 1 A MSE 155 A MSE 254 A MSE 256 A CYS 501 B 7 1.35 1.44 100.3 -1.52 -0.44 21.9 81 8 10 7 7 1 2 2  MSE 1 B MSE 155 B MSE 254 B MSE 256 B CYS 601 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.