PDBsum entry 1rd8 Go to PDB code:  Pore analysis for: 1rd8 calculated with MOLE 2.0 PDB id 1rd8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.71 2.82 35.8 -1.74 -0.28 28.9 84 4 7 4 4 1 0 0   2 2.70 2.71 36.3 -1.82 -0.28 29.7 84 4 7 4 4 1 0 0   3 2.69 2.71 37.1 -2.07 -0.35 31.8 84 4 7 4 4 1 0 0   4 1.86 4.52 37.8 -3.01 -0.70 35.8 82 4 2 1 0 0 0 0   5 2.71 2.81 53.7 -1.64 -0.52 22.6 87 4 8 2 2 1 0 0   6 2.69 2.72 56.3 -1.97 -0.61 24.5 87 5 8 2 3 1 0 0   7 2.71 2.72 56.3 -1.93 -0.58 24.6 87 5 8 2 3 1 0 0   8 1.50 5.00 69.1 -2.56 -0.70 26.2 86 9 8 10 2 2 0 0  PO4 301 B 9 1.31 3.29 76.0 -1.75 -0.54 18.3 87 4 5 11 5 2 0 0   10 1.31 3.24 106.6 -2.48 -0.66 24.3 85 11 8 12 3 2 0 0  PO4 301 B 11 1.48 4.10 105.3 -2.15 -0.69 25.5 85 5 8 9 3 2 0 0  NAG 2 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.