PDBsum entry 1rd8 Go to PDB code:  Tunnel analysis for: 1rd8 calculated with MOLE 2.0 PDB id 1rd8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.05 2.23 32.3 -2.09 -0.74 20.7 85 5 4 4 1 0 0 0   2 1.50 5.00 50.5 -2.80 -0.60 33.3 84 7 6 7 4 2 0 0  PO4 301 B 3 1.51 5.00 51.5 -2.87 -0.62 33.6 84 7 6 7 4 2 0 0  PO4 301 B 4 1.47 5.00 53.0 -2.87 -0.66 33.6 83 8 7 8 2 2 0 0  PO4 301 B 5 1.35 3.66 63.2 -2.66 -0.56 30.5 83 9 6 9 4 2 0 0  PO4 301 B 6 1.67 1.96 22.6 -1.56 -0.35 26.6 82 3 2 3 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.