spacer
spacer

PDBsum entry 1qws
Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1qws calculated with MOLE 2.0 PDB id
1qws
Tunnels calculated on whole structure Tunnels calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 34 tunnels, coloured by tunnel radius 34 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.22 83.6 -0.23 -0.08 10.6 80 8 1 4 9 7 3 0  HEM 760 A
2 1.14 1.28 87.0 -0.79 -0.26 12.2 82 9 2 5 10 5 4 0  HEM 760 B
3 1.19 1.19 86.3 -0.19 -0.02 10.9 81 8 1 4 10 7 3 0  HEM 760 A
4 1.15 1.36 86.7 -0.35 -0.08 11.2 84 7 4 6 10 7 1 0  HEM 760 C
5 1.24 1.25 90.2 -0.60 -0.17 12.8 86 8 4 7 9 6 1 0  HEM 760 B
6 1.25 3.51 89.7 -0.43 -0.07 12.2 85 8 4 6 11 7 1 0  HEM 760 C
7 1.23 1.36 91.2 -0.57 -0.17 11.9 82 10 2 5 13 7 3 0  HEM 760 C
8 1.23 1.23 92.3 -0.41 0.01 12.9 84 7 5 7 9 8 1 0  HEM 760 A
9 1.24 1.29 91.4 -0.50 -0.21 11.1 83 9 2 6 13 7 3 0  HEM 760 C
10 1.27 1.50 92.1 -0.40 -0.14 11.1 87 6 5 9 11 7 1 0  HEM 760 C
11 1.19 1.20 93.3 -0.49 0.02 14.8 80 12 3 4 13 8 5 0  HEM 760 A
12 1.23 1.37 93.7 -0.72 -0.27 11.6 84 10 2 6 11 5 4 0  HEM 760 B
13 1.24 1.28 93.8 -0.63 -0.23 12.0 83 10 2 6 12 7 4 0  HEM 760 C
14 1.17 1.36 93.4 -0.33 -0.09 11.2 86 8 4 7 11 7 1 0  HEM 760 C
15 1.23 3.43 94.7 -0.49 -0.07 13.4 86 7 5 9 11 8 1 0  HEM 760 C
16 1.28 1.49 94.5 -0.51 -0.15 12.1 86 7 5 9 10 7 2 0  HEM 760 C
17 1.19 1.19 97.2 -0.21 -0.07 10.1 86 7 5 8 11 8 1 0  HEM 760 A
18 1.16 1.15 97.7 -0.46 -0.11 12.0 81 9 4 5 10 7 4 0  HEM 760 A
19 1.19 1.20 98.9 -0.41 -0.03 13.1 81 12 3 4 14 8 4 0  HEM 760 A
20 1.26 2.62 100.4 -0.09 0.02 9.5 81 9 1 5 15 7 5 0  HEM 760 A
21 1.25 1.54 100.8 -0.25 -0.07 11.4 82 11 3 5 15 8 4 0  HEM 760 A
22 1.19 1.27 101.3 -0.63 -0.13 13.5 80 11 5 5 13 8 4 0  HEM 760 C
23 1.23 1.23 102.2 -0.48 -0.27 9.3 84 9 2 6 17 5 4 0  HEM 760 B
24 1.24 1.28 102.7 -0.66 -0.06 14.8 81 11 5 6 14 8 4 0  HEM 760 C
25 1.15 1.36 104.5 -0.62 -0.15 12.9 81 11 5 6 14 8 4 0  HEM 760 C
26 1.25 1.28 105.9 -0.68 -0.10 14.0 81 12 5 5 15 8 4 0  HEM 760 C
27 1.21 1.26 108.0 -0.57 -0.13 12.8 81 12 5 6 14 8 4 0  HEM 760 C
28 1.20 1.26 108.5 -0.73 -0.16 13.9 81 12 5 6 14 8 5 0  HEM 760 C
29 1.21 1.34 117.8 -0.72 -0.30 11.2 83 10 5 8 12 6 5 0  HEM 760 B
30 1.19 1.38 121.0 -0.77 -0.25 13.3 81 13 6 5 13 9 2 0  HEM 760 C
31 1.16 1.36 122.4 -0.78 -0.19 14.6 82 13 6 6 14 9 2 0  HEM 760 C
32 1.19 1.29 122.2 -0.70 -0.21 14.0 80 13 7 6 11 10 2 0  HEM 760 D
33 1.17 1.17 127.7 -0.72 -0.23 13.2 82 14 6 6 14 9 2 0  HEM 760 C
34 1.35 3.01 18.6 -1.35 -0.25 27.3 71 2 3 1 2 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer