PDBsum entry 1qi9 Go to PDB code:  Tunnel analysis for: 1qi9 calculated with MOLE 2.0 PDB id 1qi9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.45 16.3 -1.17 0.00 28.6 79 2 2 0 2 1 0 0   2 1.35 1.37 19.4 -1.26 0.01 23.4 84 3 3 2 3 1 1 0   3 1.27 1.34 20.3 -1.17 -0.03 23.2 84 3 3 1 3 1 1 0   4 1.69 2.38 21.2 -1.11 -0.39 13.5 83 4 0 2 3 1 0 0   5 1.56 2.23 22.3 -0.95 -0.30 14.7 86 4 0 3 3 1 0 0   6 1.19 1.35 15.3 0.14 0.01 7.7 80 1 2 1 5 1 1 0   7 1.60 1.79 17.4 -0.41 -0.40 11.9 71 1 3 0 1 2 0 0   8 1.61 1.78 17.4 -0.37 -0.39 11.6 71 1 3 0 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.