PDBsum entry 1q9d Go to PDB code:  Tunnel analysis for: 1q9d calculated with MOLE 2.0 PDB id 1q9d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.18 17.5 -1.30 -0.40 11.4 84 3 0 0 5 0 2 0   2 1.14 1.15 17.7 -1.26 -0.38 11.8 84 3 0 0 5 0 2 0   3 1.18 1.60 17.8 -0.87 -0.43 7.4 87 2 0 1 5 0 2 0   4 1.14 1.14 18.3 -1.24 -0.38 12.4 84 3 0 0 5 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.