 |
PDBsum entry 1ph4
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1ph4 calculated with MOLE 2.0
|
PDB id
|
|
|
|
1ph4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
7 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.33 |
2.53 |
29.6 |
-1.77 |
-0.47 |
22.8 |
89 |
 |
4 |
3 |
4 |
3 |
0 |
1 |
0 |
 |
|
 |
 |
2 |
 |
2.32 |
2.52 |
39.9 |
-1.71 |
-0.59 |
21.4 |
89 |
4 |
3 |
3 |
3 |
0 |
1 |
0 |
|
 |
3 |
 |
1.49 |
1.48 |
56.6 |
-1.41 |
-0.57 |
16.3 |
85 |
3 |
9 |
7 |
5 |
1 |
0 |
0 |
|
 |
4 |
 |
1.48 |
1.48 |
58.5 |
-1.34 |
-0.50 |
14.4 |
85 |
2 |
6 |
7 |
4 |
1 |
1 |
0 |
|
 |
5 |
 |
1.30 |
1.38 |
31.5 |
-1.60 |
-0.48 |
21.7 |
72 |
2 |
2 |
0 |
3 |
1 |
0 |
0 |
DG 4 D
|
 |
6 |
 |
1.04 |
1.31 |
129.9 |
-1.60 |
-0.52 |
11.8 |
84 |
6 |
3 |
13 |
6 |
2 |
1 |
0 |
DG 3 D
|
 |
7 |
 |
1.63 |
1.82 |
52.8 |
-0.86 |
-0.47 |
11.9 |
88 |
3 |
3 |
5 |
2 |
2 |
0 |
0 |
DG 3 G DG 4 H DT 5 H
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |