spacer
spacer

PDBsum entry 1ph4

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1ph4 calculated with MOLE 2.0 PDB id
1ph4
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.33 2.53 29.6 -1.77 -0.47 22.8 89 4 3 4 3 0 1 0  
2 2.32 2.52 39.9 -1.71 -0.59 21.4 89 4 3 3 3 0 1 0  
3 1.49 1.48 56.6 -1.41 -0.57 16.3 85 3 9 7 5 1 0 0  
4 1.48 1.48 58.5 -1.34 -0.50 14.4 85 2 6 7 4 1 1 0  
5 1.30 1.38 31.5 -1.60 -0.48 21.7 72 2 2 0 3 1 0 0  DG 4 D
6 1.04 1.31 129.9 -1.60 -0.52 11.8 84 6 3 13 6 2 1 0  DG 3 D
7 1.63 1.82 52.8 -0.86 -0.47 11.9 88 3 3 5 2 2 0 0  DG 3 G DG 4 H DT 5 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer