PDBsum entry 1obj Go to PDB code:  Tunnel analysis for: 1obj calculated with MOLE 2.0 PDB id 1obj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 2.03 50.0 -0.47 -0.37 9.6 84 4 4 4 7 2 3 1   2 1.30 1.61 51.2 -0.52 -0.46 9.2 87 4 4 5 8 1 3 1   3 1.37 1.48 58.5 -1.14 -0.42 15.7 78 9 3 1 5 5 1 0   4 1.41 1.53 58.8 -1.09 -0.43 15.4 79 8 4 2 5 5 1 0   5 1.25 1.30 60.1 -0.92 -0.33 12.3 79 7 3 1 7 5 1 0   6 1.36 1.46 63.0 -1.67 -0.40 21.6 79 11 3 1 5 4 1 0   7 1.42 1.52 65.2 -0.87 -0.35 13.0 78 7 2 2 5 5 1 0   8 1.36 1.44 76.1 -0.88 -0.28 13.9 78 8 2 1 8 7 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.