PDBsum entry 1nm3 Go to PDB code:  Tunnel analysis for: 1nm3 calculated with MOLE 2.0 PDB id 1nm3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.08 1.09 27.5 1.32 0.41 1.7 80 0 0 2 7 4 0 0  MSE 4 A MSE 109 A MSE 129 A MSE 139 A MSE 158 A 2 1.06 1.06 23.4 1.33 0.41 1.7 77 0 0 1 7 4 0 0  MSE 109 B MSE 111 B MSE 129 B MSE 139 B MSE 158 B 3 1.12 1.12 24.4 1.48 0.37 3.0 79 0 1 1 7 3 0 0  MSE 129 B MSE 139 B MSE 158 B 4 1.09 1.20 17.3 -0.92 -0.57 8.2 70 1 2 1 0 4 0 0   5 1.19 1.73 23.7 -0.52 -0.17 5.1 84 1 0 5 2 2 1 0  MSE 83 A 6 1.33 2.16 15.4 0.69 0.18 11.8 87 2 1 3 4 0 0 0   7 1.24 2.34 22.6 -0.34 -0.10 4.6 84 1 0 5 2 2 1 0  MSE 83 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.