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PDBsum entry 1jz4
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Pore analysis for: 1jz4 calculated with MOLE 2.0 PDB id
1jz4
Pores calculated on whole structure Pores calculated excluding ligands
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66 pores, coloured by radius 63 pores, coloured by radius 63 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.83 2.68 30.3 -1.47 -0.35 13.2 83 1 1 6 2 3 0 0  
2 2.03 2.03 32.5 -1.49 -0.43 12.4 79 4 0 4 2 1 0 1  DMS 8503 D
3 2.70 4.93 36.6 -1.48 -0.38 16.8 88 5 1 5 5 0 2 0  
4 1.92 4.42 36.5 -0.83 -0.25 16.0 90 4 2 3 5 0 1 0  
5 1.92 4.35 42.1 -1.01 -0.33 15.8 87 3 4 2 5 0 1 0  
6 2.70 4.93 42.2 -1.42 -0.41 15.5 86 4 3 4 5 0 2 0  
7 1.69 2.26 47.8 -1.31 -0.12 14.4 69 6 4 3 2 4 3 0  DMS 8403 D
8 1.57 1.57 47.6 -1.90 -0.69 16.8 87 4 2 4 2 0 1 0  
9 2.05 2.04 52.7 -1.32 -0.40 18.6 82 8 3 7 4 3 1 1  
10 1.73 2.65 56.7 -1.35 -0.17 14.4 72 6 4 3 4 4 4 0  DMS 8403 C
11 2.55 2.81 56.8 -1.50 -0.32 20.0 81 9 4 9 4 4 2 0  DMS 8427 C DMS 8503 C
12 2.05 2.03 58.5 -0.84 -0.38 12.3 78 3 5 7 8 5 1 1  DMS 8427 C DMS 8503 C
13 2.43 2.85 59.5 -1.64 -0.39 20.3 82 10 4 9 4 4 2 0  DMS 8407 C DMS 8503 D
14 4.08 5.90 59.7 -2.14 -0.53 21.9 79 5 6 9 4 5 2 0  DMS 8407 C DMS 8427 C DMS 8503 C DMS 8503 D
15 2.05 2.03 60.1 -1.19 -0.33 17.3 78 8 7 7 6 6 1 1  
16 2.44 2.79 64.5 -1.45 -0.35 20.2 83 10 3 7 5 4 1 0  DMS 8503 D
17 2.56 2.90 66.8 -1.49 -0.36 19.6 80 11 8 9 5 7 2 0  DMS 8407 C DMS 8503 D
18 2.45 2.95 68.2 -1.38 -0.35 18.2 78 9 8 7 5 7 2 0  DMS 8427 C DMS 8503 C
19 2.54 2.89 72.0 -1.29 -0.31 19.1 79 10 7 7 7 7 1 0  DMS 8503 D
20 1.52 1.52 89.9 -0.89 -0.38 12.1 82 4 5 8 11 4 0 1  DMS 8427 C DMS 8503 C DMS 8503 D
21 1.74 1.89 95.1 -1.52 -0.30 18.6 75 15 6 11 7 8 4 0  DMS 8403 C DMS 8427 C DMS 8503 C
22 1.54 1.54 98.0 -1.67 -0.47 18.1 83 8 5 9 8 4 0 0  DMS 8427 C DMS 8503 C DMS 8503 D
23 1.51 1.52 99.7 -1.32 -0.39 16.6 81 10 8 8 8 6 1 0  DMS 8427 C DMS 8503 C
24 1.30 2.31 142.9 -1.02 -0.22 15.3 79 10 9 12 13 10 3 1  DMS 8407 C DMS 8415 C DMS 8427 C DMS 8506 C DMS
8503 D
25 3.76 4.12 27.3 -1.53 -0.34 16.3 82 3 0 3 2 1 0 0  DMS 8407 A DMS 8427 B
26 1.85 2.85 36.6 -1.45 -0.05 23.3 79 5 3 2 2 2 2 0  DMS 8506 B
27 1.49 1.87 39.6 -1.41 -0.41 23.3 82 4 3 2 3 3 0 0  
28 2.48 4.36 41.5 -2.16 -0.61 18.3 91 5 4 5 2 0 2 0  
29 2.48 4.34 49.2 -1.95 -0.64 17.7 88 5 6 4 3 1 2 0  
30 3.74 4.01 52.8 -0.64 -0.32 12.5 80 4 4 5 8 5 0 0  DMS 8503 A DMS 8427 B
31 1.62 2.09 60.9 -1.77 -0.33 20.8 79 8 5 5 4 3 0 0  DMS 8403 A DMS 8503 A DMS 8407 B
32 2.20 2.74 61.1 -0.95 -0.30 15.2 76 8 6 5 6 6 1 0  DMS 8503 A
33 4.12 5.86 61.3 -1.89 -0.41 21.4 80 8 4 6 4 4 0 0  DMS 8407 A DMS 8503 A DMS 8427 B
34 1.74 2.86 67.2 -1.54 -0.29 17.1 74 8 3 6 4 4 3 0  DMS 8407 A DMS 8403 B
35 2.37 2.38 68.1 -1.18 -0.29 17.7 80 11 7 7 6 6 0 0  DMS 8427 B
36 2.36 2.36 71.5 -1.49 -0.30 19.2 82 11 4 7 8 3 1 0  DMS 8503 A
37 2.37 2.37 78.4 -1.21 -0.36 17.4 80 10 8 6 10 6 1 0  DMS 8427 B
38 1.59 2.08 81.0 -1.20 -0.03 16.8 75 8 5 3 5 6 2 0  DMS 8403 A DMS 8506 B
39 3.65 5.18 83.2 -1.10 -0.26 16.6 80 6 8 6 10 6 2 0  DMS 8503 A DMS 8407 B DMS 8427 B DMS 8506 B
40 2.36 2.36 85.9 -1.54 -0.21 21.2 81 12 7 9 6 5 2 0  DMS 8503 A DMS 8407 B DMS 8506 B
41 1.57 2.09 91.8 -1.43 -0.29 18.1 79 14 6 10 7 6 0 0  DMS 8403 A DMS 8503 A
42 2.24 2.76 91.5 -1.21 -0.23 17.8 77 10 10 6 7 8 3 0  DMS 8503 A DMS 8407 B DMS 8506 B
43 1.66 2.09 94.1 -1.72 -0.36 20.1 78 11 7 8 7 7 0 0  DMS 8403 A DMS 8407 A DMS 8503 A DMS 8427 B
44 1.68 2.08 97.3 -1.17 -0.31 15.5 77 12 9 8 8 9 1 0  DMS 8403 A DMS 8503 A
45 1.43 3.81 37.2 -1.28 -0.06 20.6 80 4 3 4 5 3 0 0  
46 2.37 2.88 39.6 -2.21 -0.49 26.3 81 4 6 3 2 0 3 1  DMS 8420 C
47 2.37 2.88 43.6 -1.33 -0.35 18.9 82 4 6 5 4 1 3 1  DMS 8420 C
48 2.68 3.19 49.5 -1.44 -0.23 17.8 78 7 4 5 4 3 2 1  DMS 8420 B
49 1.09 1.25 50.6 -1.49 -0.31 21.8 79 4 8 3 4 0 5 1  DMS 8404 B DMS 8420 C
50 1.45 3.81 54.3 -1.47 -0.25 18.8 80 6 5 7 7 2 2 1  DMS 8420 C
51 1.87 1.93 54.7 -1.48 -0.37 13.6 77 3 5 8 2 2 7 2  
52 1.84 2.00 55.8 -1.13 -0.31 11.0 78 2 4 10 2 2 6 2  
53 1.35 1.37 57.4 -1.75 -0.49 22.2 80 5 7 5 4 2 3 1  DMS 8420 B DMS 8412 C
54 1.83 1.99 68.9 -2.01 -0.52 17.8 77 6 8 7 3 2 8 2  DMS 8420 B
55 1.86 1.92 70.0 -1.70 -0.46 15.2 78 5 7 9 3 2 7 2  DMS 8420 B
56 1.24 1.33 75.8 -1.36 -0.39 17.1 79 6 7 8 5 1 8 1  
57 1.28 1.33 96.6 -1.75 -0.48 19.7 78 9 10 6 7 1 9 1  DMS 8404 B DMS 8420 B
58 1.26 1.32 97.8 -1.48 -0.37 17.4 77 9 7 5 7 3 8 0  DMS 8404 B
59 3.87 4.19 28.5 -0.61 0.02 15.7 77 4 3 3 3 2 2 1  
60 1.84 2.02 55.0 -1.70 -0.40 15.1 73 4 5 5 3 3 7 1  
61 2.55 3.13 55.4 -1.35 -0.26 20.6 81 7 5 5 5 2 2 1  DMS 8409 A
62 1.86 2.02 62.6 -1.53 -0.38 12.9 73 4 4 7 4 3 7 1  
63 1.84 2.01 90.5 -1.92 -0.49 18.6 75 7 7 8 5 2 9 2  DMS 8409 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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