PDBsum entry 1jro Go to PDB code:  Tunnel analysis for: 1jro calculated with MOLE 2.0 PDB id 1jro Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.49 40.5 -0.54 -0.55 5.4 93 1 1 5 2 1 2 0   2 1.42 1.42 16.1 -1.07 -0.84 12.8 88 1 1 0 0 0 0 0   3 1.21 2.29 15.9 0.56 0.02 12.5 84 2 2 0 6 0 0 0   4 1.12 2.17 19.3 2.21 0.62 2.4 73 0 1 0 6 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.