PDBsum entry 1jdv Go to PDB code:  Pore analysis for: 1jdv calculated with MOLE 2.0 PDB id 1jdv Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.70 26.2 -1.71 -0.43 22.2 74 4 2 1 2 2 0 0   2 2.28 3.66 35.5 -2.37 -0.19 6.7 79 2 2 9 0 6 0 0   3 1.51 1.71 51.9 -0.87 -0.23 15.7 82 5 3 1 3 3 0 0   4 1.27 1.28 111.2 -0.74 -0.20 17.4 77 6 5 3 8 4 1 0  ADN 4260 E SO4 5250 E 5 2.09 2.13 83.1 -0.81 -0.25 21.0 75 2 7 3 7 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.