PDBsum entry 1j8f

Pore analysis for: 1j8f calculated with

MOLE 2.0

PDB id

1j8f

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.72

2.35

25.4

0.69

0.13

6.4

78

0

2

2

4

2

1

0

2

1.45

1.44

35.8

-1.02

-0.45

12.1

84

3

2

5

4

1

0

0

3

1.19

1.83

56.9

-1.41

-0.43

20.2

78

4

3

2

2

1

0

0

4

1.45

1.46

64.9

-0.20

-0.17

9.3

81

3

2

8

9

3

1

0

5

2.13

2.38

43.3

0.47

0.24

3.8

79

2

0

2

7

2

1

0

6

1.70

2.05

58.5

-0.60

-0.09

13.3

78

2

4

2

5

3

1

0

7

1.60

1.74

26.2

-0.61

-0.37

9.0

87

2

1

5

4

1

0

0

8

2.13

2.70

27.3

-0.32

0.30

21.9

80

2

1

0

2

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.