PDBsum entry 1j8f Go to PDB code:  Tunnel analysis for: 1j8f calculated with MOLE 2.0 PDB id 1j8f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 2.11 17.0 0.73 0.40 10.1 79 2 1 2 4 1 0 0   2 1.51 1.74 21.3 -0.06 -0.12 11.3 85 2 2 3 4 1 0 0   3 1.65 1.65 16.3 -2.73 -0.83 35.7 79 3 4 0 0 0 0 0   4 1.66 1.66 24.5 -3.15 -0.84 40.3 80 3 7 1 0 0 0 0   5 1.16 2.03 15.7 -0.72 -0.21 24.0 79 1 2 1 3 2 0 0   6 1.49 1.49 15.7 -0.30 -0.10 10.3 72 2 1 1 2 1 0 0   7 1.42 1.50 15.2 -1.18 -0.67 16.8 81 1 2 2 0 0 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.