PDBsum entry 1hk5

Pore analysis for: 1hk5 calculated with

MOLE 2.0

PDB id

1hk5

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

5 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.83

3.07

26.5

-1.44

-0.09

24.1

79

3

2

1

3

1

0

1

MYR 1005 A

2

1.26

1.40

31.5

-1.35

-0.20

22.2

79

4

0

0

3

0

2

0

3

1.54

1.55

34.9

-1.11

-0.17

19.5

74

5

2

1

3

2

1

1

MYR 1002 A

4

2.32

2.41

39.7

-1.69

-0.27

22.9

84

5

6

4

5

1

0

0

T44 1008 A

5

2.15

2.79

45.0

-1.24

-0.08

23.9

82

6

4

4

6

2

2

0

MYR 1003 A MYR 1004 A

6

2.13

2.83

56.5

-0.80

-0.04

22.6

81

8

4

3

10

1

0

0

MYR 1006 A

7

2.10

2.85

60.9

0.18

0.12

13.7

83

5

2

6

16

2

1

0

MYR 1003 A MYR 1004 A MYR 1006 A

8

1.84

3.13

62.3

-2.52

-0.35

35.4

77

10

5

2

4

1

1

1

T44 1008 A

9

1.93

3.12

78.2

-2.46

-0.37

32.4

80

10

10

3

6

2

1

1

T44 1008 A

10

1.58

2.28

81.0

-1.03

-0.06

20.7

80

10

5

6

12

3

2

1

MYR 1002 A MYR 1003 A MYR 1004 A

11

2.54

3.10

84.9

-1.13

-0.31

22.2

85

6

4

5

11

1

0

0

MYR 1006 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.