PDBsum entry 1gd2 Go to PDB code:  Pore analysis for: 1gd2 calculated with MOLE 2.0 PDB id 1gd2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.75 1.80 31.5 -0.66 0.00 23.4 68 5 2 0 2 2 0 0  DG -5 A DT -3 C DA -2 C DC -1 C DT -4 D DT -3 D 2 1.87 1.87 35.1 -1.59 -0.79 15.0 84 3 1 3 1 0 0 0  DG 1 A DT 2 A DA 4 A DC 5 A DC 6 A DA -7 B DG - 6 B DA -2 B DC -1 B DG 1 B DT 2 B DT 2 C DA -7 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.