PDBsum entry 1gd2 Go to PDB code:  Tunnel analysis for: 1gd2 calculated with MOLE 2.0 PDB id 1gd2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.34 17.8 -2.38 -0.29 31.7 74 6 1 1 0 1 0 0  DA -2 A DC -1 A 2 1.37 1.37 18.1 -2.31 -0.28 31.9 74 5 1 1 0 1 0 0  DT -3 A DA -2 A DC -1 A 3 1.33 1.33 28.3 -2.57 -0.42 34.5 74 5 2 1 1 1 0 0  DC -1 A DT -3 B DA -2 B DC -1 B 4 1.32 1.32 31.0 -2.74 -0.33 34.5 77 4 1 1 1 1 0 0  DC -1 A DA -2 B DC -1 B DG -6 D DG -5 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.