PDBsum entry 1ebd

Pore analysis for: 1ebd calculated with

MOLE 2.0

PDB id

1ebd

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

3 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.45

4.10

31.0

-2.59

-0.51

25.2

80

8

4

4

1

0

2

0

2

1.79

2.08

44.4

-0.28

-0.14

9.8

78

3

2

3

4

3

2

2

FAD 462 A

3

1.27

2.43

47.2

-0.62

-0.43

12.4

78

4

4

2

3

1

1

2

FAD 462 A

4

1.80

2.11

48.6

-0.61

-0.31

12.5

74

2

3

2

4

3

2

2

FAD 462 A

5

1.16

1.42

73.2

-0.68

-0.04

19.6

79

7

2

1

6

1

1

0

6

1.31

1.42

77.0

-0.29

0.02

16.8

74

5

6

2

13

3

2

2

FAD 462 A

7

1.32

1.51

83.3

-0.20

0.09

14.9

72

4

6

3

13

5

2

2

FAD 462 A

8

2.07

2.30

37.0

-0.46

-0.25

12.8

81

4

3

2

4

1

2

2

FAD 462 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.