PDBsum entry 1ebd Go to PDB code:  Tunnel analysis for: 1ebd calculated with MOLE 2.0 PDB id 1ebd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 61.7 -0.55 -0.30 14.2 80 5 5 0 13 2 2 0   2 1.36 1.43 19.3 0.04 -0.35 7.9 91 1 1 2 5 0 1 0  FAD 462 B 3 1.37 1.42 27.0 -0.14 -0.22 9.7 83 1 1 1 6 1 1 2  FAD 462 B 4 1.36 1.58 15.3 0.64 -0.08 7.3 94 2 0 0 4 0 0 0   5 1.37 1.59 19.3 -0.12 0.20 17.8 87 3 0 0 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.