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PDBsum entry 1de4

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Metal transport inhibitor/receptor PDB id
1de4
Contents
Protein chains
272 a.a. *
99 a.a. *
635 a.a. *
Ligands
NAG ×3
GOL
Metals
_CA ×3
Waters ×9
* Residue conservation analysis

References listed in PDB file
Key reference
Title Crystal structure of the hereditary haemochromatosis protein hfe complexed with transferrin receptor.
Authors M.J.Bennett, J.A.Lebrón, P.J.Bjorkman.
Ref. Nature, 2000, 403, 46-53. [DOI no: 10.1038/47417]
PubMed id 10638746
Abstract
HFE is related to major histocompatibility complex (MHC) class I proteins and is mutated in the iron-overload disease hereditary haemochromatosis. HFE binds to the transferrin receptor (TfR), a receptor by which cells acquire iron-loaded transferrin. The 2.8 A crystal structure of a complex between the extracellular portions of HFE and TfR shows two HFE molecules which grasp each side of a twofold symmetric TfR dimer. On a cell membrane containing both proteins, HFE would 'lie down' parallel to the membrane, such that the HFE helices that delineate the counterpart of the MHC peptide-binding groove make extensive contacts with helices in the TfR dimerization domain. The structures of TfR alone and complexed with HFE differ in their domain arrangement and dimer interfaces, providing a mechanism for communicating binding events between TfR chains. The HFE-TfR complex suggests a binding site for transferrin on TfR and sheds light upon the function of HFE in regulating iron homeostasis.
Figure 1.
Figure 1: Ribbon diagrams of HFE, TfR and HFE-TfR structures. a, HFE^5 (PDB code 1A6Z). Residues substituted in HH mutations (Cys 260 and His 41)3 and a cluster of histidines (residues 87, 89, 94 and 123) are highlighted. An arrow indicates the inward displacement of 1 domain helix as compared with the analogous class I MHC helix. b, TfR monomer from homodimer structure^15 (made using coordinates provided by C. M. Lawrence and S. C. Harrison). A, apical loop (residues 312-328); PL, protease-like loop (residues 469-476); C tail, C-terminal tail (residues 750-760). c, Two views of the HFE-TfR structure related by a 90° rotation about the vertical axis. Chain termini nearest the predicted transmembrane region (C terminus for HFE heavy chain; N terminus for TfR) are labelled (left). The membrane bilayer is represented by a grey box (right).
Figure 2.
Figure 2: The HFE-TfR interface. Cut away views of a TfR monomer (a) and the HFE platform (b) from the HFE-TfR structure are shown with regions containing residues that form contacts highlighted in gold (HFE) and aqua (TfR). Side chains of residues identified by site-directed mutagenesis to affect ligand binding are highlighted on TfR in cyan (Fe-Tf binding28) and on HFE in red (TfR binding12). c, Representation of HFE-TfR interface showing the three-helix bundle and kinked portion of the HFE 2 helix. d, TCR footprint (pink box) on the structure of a class I MHC molecule. Arrows indicate the 'high points' on the 1 and 2 helices (Based on Fig. 5 in ref. 4).
The above figures are reprinted by permission from Macmillan Publishers Ltd: Nature (2000, 403, 46-53) copyright 2000.
PROCHECK
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