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PDBsum entry 1dce

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Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 1dce calculated with MOLE 2.0 PDB id
1dce
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.83 1.93 49.6 -0.86 0.01 12.1 80 4 4 4 6 5 1 0  FME 1 A
2 2.41 2.58 55.2 -1.92 -0.39 24.0 77 9 6 3 3 4 1 0  FME 1 A
3 1.90 1.90 58.3 -1.39 -0.14 16.5 78 8 5 5 5 4 2 0  FME 1 A
4 1.37 2.76 105.9 -0.86 0.24 16.2 74 10 9 8 6 12 1 2  FME 1 A
5 1.40 2.89 107.2 -1.28 -0.16 20.6 75 11 11 6 6 10 0 2  FME 1 A
6 2.35 3.29 29.1 -1.70 -0.46 19.9 87 3 2 4 5 0 2 0  
7 2.55 2.79 29.4 -1.74 -0.45 17.8 84 4 3 3 4 0 2 0  
8 2.70 2.70 30.3 -3.02 -0.69 35.4 78 5 4 3 1 1 0 0  
9 1.67 1.85 35.0 -1.78 -0.60 15.9 85 3 3 4 2 0 1 0  
10 1.35 2.72 36.9 -2.05 -0.35 26.2 71 6 2 2 4 3 1 0  
11 1.67 1.96 37.5 -1.48 -0.33 21.7 78 2 3 2 4 0 2 0  
12 1.83 1.95 48.1 -2.73 -0.65 31.5 81 4 6 3 0 0 2 1  
13 1.52 2.22 49.5 -2.79 -0.64 27.2 83 6 4 3 0 0 1 0  
14 1.79 2.29 50.6 -0.91 -0.38 16.6 88 8 4 7 5 0 2 0  
15 1.37 2.68 52.4 -1.71 -0.31 24.1 79 10 4 2 5 3 2 0  
16 1.27 2.03 47.1 -2.06 -0.38 29.2 80 10 4 2 4 2 2 0  
17 2.22 2.52 51.3 -1.25 -0.47 17.3 85 6 5 5 5 0 3 0  
18 2.21 2.51 57.7 -0.88 -0.32 11.6 85 3 3 5 6 0 4 0  
19 1.29 2.03 61.9 -2.01 -0.34 23.4 79 8 3 3 5 2 4 0  
20 2.60 2.87 65.0 -1.62 -0.37 19.4 87 7 4 5 7 0 5 0  
21 1.75 1.97 66.3 -1.81 -0.57 21.8 87 3 4 7 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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