PDBsum entry 1bkp Go to PDB code:  Tunnel analysis for: 1bkp calculated with MOLE 2.0 PDB id 1bkp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 3.01 35.7 0.64 0.49 6.4 67 1 1 2 8 5 0 1   2 1.32 3.07 36.1 -0.02 0.48 7.9 68 1 2 3 5 6 0 1   3 1.31 2.90 37.3 -0.57 0.45 12.4 69 5 2 2 4 6 0 1   4 1.50 1.51 20.2 -2.83 -0.75 19.9 87 2 2 6 1 1 0 0   5 1.54 1.54 20.4 -2.90 -0.74 21.2 86 2 3 6 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.