PDBsum entry 1aym Go to PDB code:  Tunnel analysis for: 1aym calculated with MOLE 2.0 PDB id 1aym Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.21 48.7 -1.51 -0.45 14.9 83 5 3 6 4 3 1 0  DAO 7009 1 2 1.12 1.24 50.5 -0.91 -0.26 11.6 81 3 3 4 5 4 2 0  DAO 7009 1 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.