Ligand clusters for UniProt code W8VZW3

Ligand clusters for W8VZW3: Chloride pumping rhodopsin from Nonlabens marinus S1-08

		Top 6 (of 15) ligand clusters Cluster 1. 5 ligand types 38 ligands Cluster 2. 4 ligand types 129 ligands Cluster 3. 3 ligand types 26 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 1 ligand type 27 ligands Cluster 6. 1 ligand type 36 ligands
Representative protein: 5fjgA

Structures

PDB		Schematic diagram
5fjgA
5g2dA
6jy9A
5g2aA
6jydA
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: RET × 28 Retinal PDB codes: 5b2n(A), 5g28(A), 5g2a(A), 5g2c(A), 5g2d(A), 5g54(A), 5ztk(A), 5ztl(A), 6ab9(A), 6aba(A), 6jy6(A), 6jy7(A), 6jy8(A), 6jy9(A), 6jya(A), 6jyb(A), 6jyc(A), 6jyd(A), 6jye(A), 6jyf(A), 7cri(A), 7crj(A), 7crk(A), 7crl(A), 7crs(A), 7crt(A), 7crx(A), 7cry(A).
_Cl		2. Metal: _CL × 7 PDB codes: 5fjg(A), 5g28(A), 5g2d(A), 5ztk(A), 5ztl(A), 6ab9(A), 6aba(A).
		3. Ligand: ANR × 1 Anhydroretinol PDB code: 5fjg(A).
		4. Ligand: OCT × 1 N-Octane PDB code: 5b2n(A).
_Br		5. Metal: _BR × 1 PDB code: 5g2a(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: OLA × 126 Oleic acid PDB codes: 5fjg(A), 5g28(A), 5g2c(A), 5g2d(A), 5g54(A), 5ztk(A), 5ztl(A), 6ab9(A), 6aba(A), 6jy6(A), 6jy7(A), 6jy8(A), 6jy9(A), 6jya(A), 6jyb(A), 6jyc(A), 6jyd(A), 6jye(A), 6jyf(A), 7cri(A), 7crj(A), 7crk(A), 7crl(A), 7crs(A), 7crt(A), 7crx(A), 7cry(A),
		2. Ligand: D10 × 1 Decane PDB code: 5b2n(A).
		3. Ligand: D12 × 1 Dodecane PDB code: 5b2n(A).
		4. Ligand: OCT × 1 N-Octane PDB code: 5b2n(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: OLA × 24 Oleic acid PDB codes: 5fjg(A), 5g2c(A), 5g2d(A), 5g54(A), 6jy6(A), 6jy7(A), 6jy8(A), 6jy9(A), 6jya(A), 6jyb(A), 6jyc(A), 6jyd(A), 6jye(A), 6jyf(A),
		2. Ligand: D12 × 1 Dodecane PDB code: 5b2n(A).
		3. Ligand: HEX × 1 Hexane PDB code: 5b2n(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: OLA × 4 Oleic acid PDB codes: 5fjg(A), 5g2c(A), 5g2d(A), 5g54(A).
		2. Ligand: D12 × 1 Dodecane PDB code: 5b2n(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: OLA × 27 Oleic acid PDB codes: 5fjg(A), 5g28(A), 5g2c(A), 5g2d(A), 5g54(A), 5ztk(A), 5ztl(A), 6ab9(A), 6aba(A), 6jy6(A), 6jy7(A), 6jy8(A), 6jy9(A), 6jya(A), 6jyb(A), 6jyc(A), 6jyd(A), 6jye(A), 6jyf(A), 7cri(A), 7crj(A), 7crk(A), 7crl(A), 7crs(A), 7crt(A), 7crx(A), 7cry(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: OLA × 36 Oleic acid PDB codes: 5fjg(A), 5g28(A), 5g2d(A), 5g54(A), 5ztk(A), 5ztl(A), 6ab9(A), 6aba(A), 6jy6(A), 6jy7(A), 6jy8(A), 6jy9(A), 6jya(A), 6jyb(A), 6jyc(A), 6jyd(A), 6jye(A), 6jyf(A), 7cri(A), 7crj(A), 7crk(A), 7crl(A), 7crs(A), 7crt(A), 7crx(A), 7cry(A).