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Ligand clusters for UniProt code Q9X0Z6

Ligand clusters for Q9X0Z6: [FeFe] hydrogenase maturase subunit HydE from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)

Top 6 (of 11) ligand clusters
Cluster 1.
5 ligand types
10 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 7o1oA  
JSmol
 

Structures

PDB   Schematic diagram
7o1oA    
7o1tA    
7o25A    

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: CYS × 3
cysteine
PDB codes: 7o1o(A), 7o1t(A), 7o25(A).


 
2. Ligand: SF4 × 3
Iron/sulfur cluster
PDB codes: 7o1o(A), 7o1t(A), 7o25(A).


 
3. Ligand: 5X8 × 2
S-Adenosyl-L-Cysteine
PDB codes: 7o1t(A), 7o25(A).


 
4. Ligand: SAH × 1
S-Adenosyl-L-Homocysteine
PDB code: 7o1o(A).


 
5. Ligand: SAM-MET × 1
SAM=S-Adenosylmethionine.
PDB code: 7o25(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: CPS × 2
3-[(3-Cholamidopropyl)dimethylammonio]-1- Propanesulfonate
PDB codes: 7o1t(A), 7o25(A).


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 7o1o(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: CPS × 1
3-[(3-Cholamidopropyl)dimethylammonio]-1- Propanesulfonate
PDB code: 7o25(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 7o1o(A).


 
2. Ligand: TAM × 1
Tris(hydroxyethyl)aminomethane
PDB code: 7o25(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PYR × 1
pyruvic acid
Pyruvic acid
PDB code: 7o1t(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 7o25(A).

 

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