Ligand clusters for UniProt code Q9UGP5

Ligand clusters for Q9UGP5: DNA polymerase lambda from Homo sapiens

		Top 6 (of 22) ligand clusters Cluster 1. 23 ligand types 105 ligands Cluster 2. 4 ligand types 6 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 3 ligand types 4 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4k4iA

Structures

PDB		Schematic diagram
4k4iA
5iiiA
5iijA
2bcvA
3uq2A
		more ...

Cluster 1 contains 23 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 30 PDB codes: 1xsn(A), 2bcq(A), 2bcr(A), 2bcs(A), 2bcv(A), 2pfn(A), 2pfo(A), 2pfp(A), 2pfq(A), 3c5g(A), 3hw8(A), 3hwt(A), 3hx0(A), 3mda(A), 3mdc(A), 3mgi(A), 3pml(A), 3pmn(A), 3pnc(A), 3uq2(A), 4fo6(A), 4xa5(A), 4xus(A), 5ddy(A), 5iii(A), 5iij(A), 5iin(A).
_Mn		2. Metal: _MN × 9 PDB codes: 2pfo(A), 2pfq(A), 3pmn(A), 3upq(A), 4fo6(A), 5ddy(A),
		3. Ligand: PPV × 8 pyrophosphoric acid Pyrophosphate PDB codes: 1xsp(A), 2bcq(A), 2bcr(A), 2bcs(A), 2bcu(A), 2pfq(A), 3mda(A), 3uq2(A).
		4. Ligand: CIT × 3 citric acid Citric acid PDB codes: 4x5v(A), 5iik(A), 5iil(A).
		5. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3pnc(A).
_Na		6. Metal: _NA × 13 PDB codes: 1xsp(A), 2bcu(A), 2bcv(A), 2pfn(A), 2pfp(A), 2pfq(A), 3c5g(A), 3hw8(A), 3pnc(A), 4x5v(A), 5iik(A), 5iil(A), 5iim(A).
_Ca		7. Metal: _CA × 8 PDB codes: 4k4g(A), 4k4h(A), 4k4i(A), 5cwr(A),
		8. Ligand: D3T × 6 2',3'-Dideoxy-Thymidine-5'-Triphosphate PDB codes: 1xsn(A), 3c5g(A), 3hw8(A), 3hwt(A), 3hx0(A), 3mgi(A).
		9. Ligand: DCP × 5 2'-Deoxycytidine-5'-Triphosphate PDB codes: 2pfp(A), 2pfq(A), 5cwr(A), 5ddy(A),
		10. Ligand: DUP × 4 2'-Deoxyuridine 5'-Alpha,Beta-Imido-Triphosphate PDB codes: 2pfn(A), 2pfo(A), 5iim(A), 5iin(A).
		11. Ligand: 1GC × 3 2'-Deoxy-5'-O-[(R)-Hydroxy{[(s)-Hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]guanosine PDB codes: 3pml(A), 3pmn(A), 3pnc(A).
		12. Ligand: DTP × 2 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 5dkw(A), 5iii(A).
		13. Ligand: SO4 × 2 Sulfate ion PDB codes: 3uq0(A), 5cp2(A).
		14. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 2bcv(A), 4xus(A).
		15. Ligand: 1RY × 1 [[(2r,5s)-5-(4-Azanyl-5-Fluoranyl-2-Oxidanylidene- Pyrimidin-1-Yl)-1,3-Oxathiolan-2-Yl]methoxy- Oxidanyl- Phosphoryl] phosphono hydrogen phosphate PDB code: 4k4i(A).
		16. Ligand: 1RZ × 1 Lamivudine triphosphate PDB code: 4k4h(A).
		17. Ligand: 1S0 × 1 4-Amino-1-{2-Deoxy-5-O-[(R)-Hydroxy{[(s)- Hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-Beta- L- Erythro-Pentofuranosyl}pyrimidin-2(1h)-One PDB code: 4k4g(A).
		18. Ligand: 8DG × 1 8-Oxo-2'-Deoxyguanosine-5'-Triphosphate PDB code: 4xa5(A).
		19. Ligand: DCT × 1 2',3'-Dideoxycytidine 5'-Triphosphate PDB code: 5iij(A).
		20. Ligand: DOC × 1 2',3'-Dideoxycytidine-5'-Monophosphate PDB code: 4xus(A).
+ more. Press for full list

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4xa5(A).
_Mn		2. Metal: _MN × 1 PDB code: 3pmn(A).
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 2bcq(A), 2bcr(A).
		4. Ligand: SO4 × 2 Sulfate ion PDB codes: 3upq(A), 3uq0(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4xa5(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2bcr(A).

Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ACT × 2 Acetate ion PDB codes: 4k4h(A), 4k4i(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2bcr(A).
_Cl		3. Metal: _CL × 1 PDB code: 2gws(A).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 3upq(A), 3uq0(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 4xa5(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 3upq(A).