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EBI
Databases
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PDBsum
Ligand clusters for UniProt code Q9RIK9
Ligand clusters for Q9RIK9: Beta-mannosidase from Thermotoga maritima
5 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 1of3A
Structures
PDB
Schematic diagram
1of3
A
1oh4
A
1of4
A
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
BMA-BMA-BMA-BMA-BMA × 1
BMA
=Beta-D-Mannopyranose.
PDB code:
1of4
(A).
2. Ligand:
BMA-BMA-BMA-BMA-BMA-GLA-GLA × 1
BMA
=Beta-D-Mannopyranose,
GLA
=Alpha-D-Galactopyranose.
PDB code:
1oh4
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1of4
(A).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1oh4
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1of4
(A),
1oh4
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1oh4
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Ca
1. Metal:
_CA × 1
PDB code:
1of3
(A).