Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q9HU22
Ligand clusters for Q9HU22: Glucose-1-phosphate thymidylyltransferase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
5 ligand clusters
Cluster 1.
15 ligand types
16 ligands
Cluster 2.
1 ligand type
12 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
13 ligands
Representative protein: 4b2xA
Structures
PDB
Schematic diagram
4b2x
A
4b4b
A
5fuh
A
3zlk
A
3zll
A
more ...
Cluster 1 contains 15 ligand types
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
3zll
(A),
4b3u
(A).
2. Ligand:
4WF × 1
5-Azanyl-6-Oxidanyl-1-(Phenylmethyl)pyrimidine-2,4- Dione
PDB code:
3zll
(A).
3. Ligand:
BZ0 × 1
N-(6-Amino-1-Benzyl-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)benzamide
PDB code:
4b2w
(A).
4. Ligand:
DH5 × 1
N-(6-Amino-1-(4-Bromo-3-Methylbenzyl)-2,4-Dioxo-1,2,3, 4-Tetrahydropyrimidin-5-Yl)-N-
Methylbenzenesulfonamide
PDB code:
5fu8
(A).
5. Ligand:
FKH × 1
N-(6-Amino-1-(3-Methylbenzyl)-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-N-
Methylbenzenesulfonamide
PDB code:
5fu0
(A).
6. Ligand:
GJB × 1
1-(2-Phenylethyl)pyrimidine-2,4,6(1h,3h,5h)-Trione
PDB code:
4b4b
(A).
7. Ligand:
HKX × 1
N-[6-Amino-1-(3-Bromobenzyl)-2,4-Dioxo-1,2,3, 4-Tetrahydropyrimidin-5-Yl]-N-
Methylbenzenesulfonamide
PDB code:
5fuh
(A).
8. Ligand:
HNR × 1
N-(6-Amino-1-Butyl-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-N-Methyl-Benzenesulfonamide
PDB code:
4arw
(A).
9. Ligand:
JWT × 1
N-(6-Amino-1-Benzyl-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-4-Fluoro-N-
Methylbenzenesulfonamide
PDB code:
4b4m
(A).
10. Ligand:
KDT × 1
N-(6-Amino-1-(4-Bromobenzyl)-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-N-
Methylbenzenesulfonamide
PDB code:
5ftv
(A).
11. Ligand:
LD6 × 1
N-(6-Amino-1-(3-Fluorobenzyl)-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-N-
Methylbenzenesulfonamide
PDB code:
5fye
(A).
12. Ligand:
NIQ × 1
6-Amino-1-Butyl-5-(Cyclopentylamino)pyrimidine-2,4(1h, 3h)-Dione
PDB code:
4b2x
(A).
13. Ligand:
NWL × 1
6-Amino-1-Benzyl-5-(Ethylamino)pyrimidine-2,4(1h,3h)- Dione
PDB code:
4b3u
(A).
14. Ligand:
P3I × 1
N-(6-Amino-1-(2-Bromobenzyl)-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)-N-
Methylbenzenesulfonamide
PDB code:
5fts
(A).
15. Ligand:
Y46 × 1
N-(6-Amino-1-Benzyl-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidin-5-Yl)benzenesulfonamide
PDB code:
3zlk
(A).
Cluster 2 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
MES × 12
2-(N-Morpholino)-Ethanesulfonic acid
PDB codes:
3zll
(A),
4arw
(A),
4b2w
(A),
4b3u
(A),
4b4b
(A),
4b4m
(A),
5fts
(A),
5ftv
(A),
5fu0
(A),
5fu8
(A),
5fuh
(A),
5fye
(A).
Cluster 3 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3zll
(A).
Cluster 4 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5fuh
(A).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
_Cl
1. Metal:
_CL × 13
PDB codes:
3zlk
(A),
3zll
(A),
4b2w
(A),
4b2x
(A),
4b3u
(A),
4b4b
(A),
4b4m
(A),
5fts
(A),
5ftv
(A),
5fu0
(A),
5fu8
(A),
5fuh
(A),
5fye
(A).