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Ligand clusters for UniProt code Q9GPQ4

Ligand clusters for Q9GPQ4: IAG-nucleoside hydrolase from Trypanosoma vivax

Top 6 (of 11) ligand clusters
Cluster 1.
7 ligand types
18 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2ff2A  
JSmol
 

Structures

PDB   Schematic diagram
2ff2A    
1hozA    
1kieA    
3epxA    
1kicA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1hoz(A).

_Ca
 
2. Metal: _CA × 9
PDB codes: 1hoz(A), 1hp0(A), 1kic(A), 1kie(A), 1r4f(A), 2ff1(A), 2ff2(A), 3epw(A), 3epx(A).


 
3. Ligand: IMH × 3
1,4-Dideoxy-4-Aza-1-(S)-(9-Deazahypoxanthin-9-Yl)-D- Ribitol
PDB codes: 2ff1(A), 2ff2(A), 3b9g(A).


 
4. Ligand: AD3 × 2
3-Deaza-Adenosine
PDB codes: 1hp0(A), 1kie(A).


 
5. Ligand: IMQ × 1
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-Ylmethyl) pyrrolidine-3,4-Diol
PDB code: 3epx(A).


 
6. Ligand: JMQ × 1
7-(((2r,3r,4s)-3,4-Dihydroxy-2-(Hydroxymethyl) pyrrolidin-1-Yl)methyl)-3h-Pyrrolo[3,2-D]pyrimidin-
4(5h)-One
PDB code: 3epw(A).


 
7. Ligand: NOS × 1
Inosine
PDB code: 1kic(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description

_Ni
 
1. Metal: _NI × 2
PDB codes: 1kic(A), 1kie(A).


 
2. Ligand: NOS × 1
Inosine
PDB code: 1kic(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: NOS × 1
Inosine
PDB code: 1kic(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1hoz(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1hoz(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 1hoz(A).

 

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