Ligand clusters for UniProt code Q9AYY6

Ligand clusters for Q9AYY6: Tail spike protein from Salmonella phage HK620

		Top 6 (of 14) ligand clusters Cluster 1. 15 ligand types 27 ligands Cluster 2. 2 ligand types 12 ligands Cluster 3. 2 ligand types 20 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4xlaA

Structures

PDB		Schematic diagram
4xlaA
6g0xA
4xleA
4xm3A
2x6yA
		more ...

Cluster 1 contains 15 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 4xmy(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 4xlc(A).
		3. Ligand: NDG-GLA-GLC-RAM-NAG × 4 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 4xlf(A), 4xmy(A), 4xot(A), 6gvr(A).
		4. Ligand: NDG-NAG-GLA-GLC-RAM-NAG × 4 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB codes: 4xkw(A), 4xm3(A), 4xor(A), 4yej(A).
		5. Ligand: NDG-NAG-GLA-GLC-RAM-NAG-GLC × 4 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB codes: 4xn3(A), 4xop(A), 4xr6(A), 4yel(A).
		6. Ligand: NAG-GLA-GLC-RAM-NAG-GLC × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB codes: 2x6y(A), 2x85(A).
		7. Ligand: NDG-GLA-GLC-RAM-NAG-GLC × 2 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 4xle(A), 6gvp(A).
_Na		8. Metal: _NA × 2 PDB codes: 4xqh(A), 4xqi(A).
		9. Ligand: GLA-GLC-RAM-NAG × 1 GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 2x6x(A).
		10. Ligand: NAG-GAL-GLC-RAM-NAG-GLC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB code: 2vjj(A).
		11. Ligand: NAG-GLA-GLC-RAM-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB code: 4xla(A).
		12. Ligand: NAG-NDG-GLA-GLC-RAM-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB code: 6g0x(A).
		13. Ligand: NDG-GLA-NAG-GLC-GLC-RAM-NAG × 1 NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, GLA=Alpha-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB code: 2x6w(A).
		14. Ligand: RAM-GLC-GLA-NAG-NDG × 1 RAM=Alpha-L-Rhamnose, GLC=Alpha-D-Glucose, GLA=Alpha d-Galactose, NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose. PDB code: 4xqi(A).
		15. Ligand: RAM-GLC-GLA-NAG-NDG-GLC × 1 RAM=Alpha-L-Rhamnose, GLC=Alpha-D-Glucose, GLA=Alpha d-Galactose, NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose. PDB code: 4xqh(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TRS × 11 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 4xlc(A), 4xle(A), 4xon(A), 4xop(A), 4xor(A), 4xqf(A), 4xqh(A), 4xqi(A), 4yel(A), 6gvp(A), 6gvr(A).
		2. Ligand: 144 × 1 Tris-Hydroxymethyl-Methyl-Ammonium PDB code: 4avz(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: TRS × 19 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 2x6w(A), 2x6x(A), 2x6y(A), 2x85(A), 4xkv(A), 4xkw(A), 4xl9(A), 4xla(A), 4xlf(A), 4xlh(A), 4xm3(A), 4xmy(A), 4xn0(A), 4xn3(A), 4xnf(A), 4xot(A), 4xr6(A), 4yej(A), 6g0x(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 2vjj(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PG0 × 1 2-(2-Methoxyethoxy)ethanol PDB code: 2vji(A).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 2vji(A).
_Cl		2. Metal: _CL × 1 PDB code: 2vji(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2vjj(A).