Ligand clusters for UniProt code Q96MU7

Ligand clusters for Q96MU7: YTH domain-containing protein 1 from Homo sapiens

		Top 6 (of 19) ligand clusters Cluster 1. 44 ligand types 107 ligands Cluster 2. 6 ligand types 6 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 4 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 6ykzA

Structures

PDB		Schematic diagram
6ykzA
6ynnA
6zcmA
6ynoA
6ynjA
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Cluster 1 contains 44 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: SO4 × 58 Sulfate ion PDB codes: 6rt4(B), 6rt7(B), 6syz(A), 6sz1(A), 6sz2(B), 6sz3(B), 6szl(B), 6szr(B), 6szt(A), 6szx(A), 6t02(A), 6t04(B), 6t05(B), 6t06(B), 6t07(B), 6t09(A), 6t0a(A), 6t0c(A), 6t0d(B), 6t0o(A), 6t0x(A), 6t10(A), 6t11(A), 6t12(A), 6we8(B), 6wea(A), 6yke(A), 6yki(A), 6ykz(A), 6yl0(A), 6yl8(A), 6yl9(A), 6ym2(A), 6ym6(A), 6ym7(A), 6ynj(A), 6ynk(A), 6ynl(A), 6ynm(A), 6ynn(A), 6yno(A), 6ynp(A), 6yoq(A), 6zcn(A).
		2. Ligand: 6MZ-__C × 2 6MZ=N6-Methyladenosine-5'-Monophosphate. PDB codes: 6rt5(B), 6rt6(B).
		3. Ligand: M4E × 2 ~{N}-Methyl-2~{h}-Indazole-3-Carboxamide PDB codes: 6t0c(A), 6ym7(A).
		4. Ligand: M4N × 2 ~{N}-Methyl-3-Phenyl-1~{h}-Pyrazole-5-Carboxamide PDB codes: 6t0d(A),
		5. Ligand: M5E × 2 (~{S})-Phenyl-[(2~{s})-Pyrrolidin-2-Yl]methanol PDB codes: 6t02(A),
		6. Ligand: M6Z × 2 5-Iodanyl-~{N}-Methyl-1~{h}-Indazole-3-Carboxamide PDB codes: 6t10(B),
		7. Ligand: M78 × 2 ~{N},2,3-Trimethyl-1~{h}-Indole-5-Carboxamide PDB codes: 6t12(A),
		8. Ligand: 6MZ × 1 N6-Methyladenosine-5'-Monophosphate PDB code: 6zcn(A).
		9. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6we8(B).
		10. Ligand: M0Q × 1 ~{N}-Methyl-1,6-Naphthyridin-4-Amine PDB code: 6sz2(B).
		11. Ligand: M0W × 1 ~{N}-Methylquinazolin-4-Amine PDB code: 6sz1(A).
		12. Ligand: M1E × 1 ~{N}-Methylthieno[3,2-D]pyrimidin-4-Amine PDB code: 6syz(A).
		13. Ligand: M1H × 1 ~{N}-Methyl-5,6,7,8-Tetrahydroquinolin-4-Amine PDB code: 6sz3(B).
		14. Ligand: M3E × 1 6-Phenyl-1~{h}-Pyrimidine-2,4-Dione PDB code: 6szl(B).
		15. Ligand: M3H × 1 2-Phenyl-4,5-Dihydro-1~{h}-Imidazole PDB code: 6t04(B).
		16. Ligand: M3Z × 1 6-[[Methyl-(Phenylmethyl)amino]methyl]-5~{h}- Pyrimidine-2,4-Dione PDB code: 6szr(B).
		17. Ligand: M45 × 1 ~{N}-[(2~{s})-Pyrrolidin-2-Yl]-1~{h}-1,2,4-Triazol-5- Amine PDB code: 6t07(B).
		18. Ligand: M4B × 1 6-Methyl-5-Nitro-4-Phenyl-1~{h}-Pyrimidin-2-One PDB code: 6t01(A).
		19. Ligand: M4K × 1 6-[[Cyclopropyl-(Phenylmethyl)amino]methyl]-5~{h}- Pyrimidine-2,4-Dione PDB code: 6szx(A).
		20. Ligand: M4Q × 1 6-[[Methyl(thiophen-3-Ylmethyl)amino]methyl]-5~{h}- Pyrimidine-2,4-Dione PDB code: 6szt(A).
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Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6wea(A).
		2. Ligand: M5E × 1 (~{S})-Phenyl-[(2~{s})-Pyrrolidin-2-Yl]methanol PDB code: 6t02(A).
		3. Ligand: M6H × 1 2-(Phenylmethyl)imidazolidine PDB code: 6t05(A).
		4. Ligand: OWZ × 1 (2~{r},5~{s})-2-(2-Chlorophenyl)-5-Methyl-Morpholine PDB code: 6yl8(A).
		5. Ligand: P0N × 1 (2~{r})-2-(2-Chlorophenyl)-5,5-Dimethyl-Morpholine PDB code: 6ynj(A).
		6. Ligand: P0Q × 1 (2~{r},3~{r})-2-(3-Chlorophenyl)-3,5,5-Trimethyl- Morpholine PDB code: 6yni(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: M5E × 1 (~{S})-Phenyl-[(2~{s})-Pyrrolidin-2-Yl]methanol PDB code: 6t02(B).
		2. Ligand: M6H × 1 2-(Phenylmethyl)imidazolidine PDB code: 6t05(B).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: M1H × 1 ~{N}-Methyl-5,6,7,8-Tetrahydroquinolin-4-Amine PDB code: 6sz3(B).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 6szy(A), 6t09(A), 6t0o(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6zd9(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6we8(B).