Ligand clusters for UniProt code Q94734

Ligand clusters for Q94734: Nitrophorin-4 from Rhodnius prolixus

		6 ligand clusters Cluster 1. 17 ligand types 33 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1d2uA

Structures

PDB		Schematic diagram
1d2uA
1sxuA
1ikjA
1ywcA
1eqdA
		more ...

Cluster 1 contains 17 ligand types

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Ligand		Description
		1. Ligand: HEM-NH3 × 6 HEM=Protoporphyrin IX containing fe, NH3=Ammonia. PDB codes: 1d2u(A), 1np4(A), 1u0x(A), 1x8p(A), 3fll(A), 4gnw(A).
		2. Ligand: HEM × 4 Protoporphyrin IX containing fe PDB codes: 1d3s(A), 1x8q(A), 1ywd(A), 3tga(A).
		3. Ligand: HEM-IMD × 4 HEM=Protoporphyrin IX containing fe, IMD=Imidazole. PDB codes: 1ikj(A), 1sxu(A), 2at3(X), 3tgb(A).
		4. Ligand: HEM-NO2 × 3 HEM=Protoporphyrin IX containing fe, NO2=Nitrite ion. PDB codes: 3mvf(A), 3tgc(A), 5hwz(A).
		5. Ligand: NH4-HEM × 3 NH4=Ammonium ion, HEM=Protoporphyrin IX containing fe. PDB codes: 1sxy(A), 1sy0(A), 1sy2(A).
		6. Ligand: HEM-CMO × 2 HEM=Protoporphyrin IX containing fe, CMO=Carbon monoxide. PDB codes: 1ywa(A), 1ywc(A).
		7. Ligand: CYN-HEV × 1 CYN=Cyanide ion, HEV=5,8-Dimethyl-1,2,3,4-Tetravinylporphine-6,7-Dipropionic acid ferrous complex. PDB code: 1eqd(A).
		8. Ligand: FDE × 1 Fe(III) deuteroporphyrin IX PDB code: 2at6(X).
		9. Ligand: HEM-BME × 1 HEM=Protoporphyrin IX containing fe, BME=Beta-Mercaptoethanol. PDB code: 4hpb(A).
		10. Ligand: HEM-CYS × 1 HEM=Protoporphyrin IX containing fe. PDB code: 4hpc(A).
		11. Ligand: HEM-H2S × 1 HEM=Protoporphyrin IX containing fe, H2S=Hydrosulfuric acid. PDB code: 4hpa(A).
		12. Ligand: HEM-HCS × 1 HEM=Protoporphyrin IX containing fe, HCS=2-Amino-4-Mercapto-Butyric acid. PDB code: 4hpd(A).
		13. Ligand: HEM-HSM × 1 HEM=Protoporphyrin IX containing fe, HSM=Histamine. PDB code: 1ike(A).
		14. Ligand: HEV-PYZ × 1 HEV=5,8-Dimethyl-1,2,3,4-Tetravinylporphine-6,7-Dipropionic acid ferrous complex, PYZ=4-Iodopyrazole. PDB code: 1ml7(A).
		15. Ligand: NH3-FDD × 1 NH3=Ammonia, FDD=Fe(III) 2,4-Dimethyl deuteroporphyrin IX. PDB code: 3c78(X).
		16. Ligand: NH3-FDE × 1 NH3=Ammonia, FDE=Fe(III) deuteroporphyrin IX. PDB code: 3c77(X).
		17. Ligand: NH3-HEM × 1 NH3=Ammonia, HEM=Protoporphyrin IX containing fe. PDB code: 3c76(X).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: CIT × 1 citric acid Citric acid PDB code: 1eqd(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: PYZ × 1 4-Iodopyrazole PDB code: 1ml7(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 1ywa(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 2 Phosphate ion PDB codes: 1ywa(A), 4gnw(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 2ofm(X).