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Ligand clusters for UniProt code Q8VVD2

Ligand clusters for Q8VVD2: Xylan alpha-1,2-glucuronidase from Geobacillus stearothermophilus

Top 6 (of 20) ligand clusters
Cluster 1.
4 ligand types
6 ligands
Cluster 2.
1 ligand type
3 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1mqqA  
JSmol
 

Structures

PDB   Schematic diagram
1mqqA    
1k9dA    
1l8nA    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1k9d(A), 1l8n(A), 1mqq(A).


 
2. Ligand: GCU × 1
Alpha-D-Glucopyranuronic acid
PDB code: 1mqq(A).


 
3. Ligand: GCW × 1
4-O-Methyl-Beta-D-Glucopyranuronic acid
PDB code: 1l8n(A).


 
4. Ligand: XYP-XYP × 1
XYP=Beta-D-Xylopyranose.
PDB code: 1l8n(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1k9d(A), 1l8n(A), 1mqq(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1k9d(A), 1l8n(A), 1mqq(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1k9d(A), 1mqq(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1k9d(A), 1l8n(A), 1mqq(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 1k9d(A), 1mqq(A).

 

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