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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q8VDF2
Ligand clusters for Q8VDF2: E3 ubiquitin-protein ligase UHRF1 from Mus musculus
Top 6 (of 17) ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
2 ligand types
2 ligands
Representative protein: 2zkdA
Structures
PDB
Schematic diagram
2zkd
A
2zo1
B
3f8j
B
2zo2
B
3fde
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3f8j
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2zo1
(B).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
3f8j
(B),
2. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
2zo1
(B),
3fde
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3f8j
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3fde
(A).
Cluster 4 contains 2 ligand types
Selection shortcuts:
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3f8j
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3fde
(A).
Cluster 5 contains 2 ligand types
Selection shortcuts:
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3f8j
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3fde
(A).
Cluster 6 contains 2 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3f8j
(B).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3fde
(A).