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Ligand clusters for UniProt code Q8RJ47

Ligand clusters for Q8RJ47: 5-carboxyvanillate decarboxylase OS=Sphingomonas paucimobilis GN=ligW PE=1 SV=1

Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
6 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4l6dA  
JSmol
 

Structures

PDB   Schematic diagram
4l6dA    
4ni8A    
4ng3A    

 

 Cluster 1 contains 4 ligand types

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Ligand Description

_Mn
 
1. Metal: _MN × 3
PDB codes: 4l6d(A), 4ng3(A), 4ni8(A).


 
2. Ligand: 1DF × 1
4-Hydroxy-3-Methoxy-5-Nitrobenzoic acid
PDB code: 4ng3(A).


 
3. Ligand: 1WB × 1
5-Methoxybenzene-1,3-Dicarboxylic acid
PDB code: 4ni8(A).


 
4. Ligand: VNL × 1
4-Hydroxy-3-Methoxybenzoate
PDB code: 4l6d(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: 1DF × 1
4-Hydroxy-3-Methoxy-5-Nitrobenzoic acid
PDB code: 4ng3(A).


 
2. Ligand: 1WB × 1
5-Methoxybenzene-1,3-Dicarboxylic acid
PDB code: 4ni8(A).


 
3. Ligand: VNL × 1
4-Hydroxy-3-Methoxybenzoate
PDB code: 4l6d(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4ng3(A), 4ni8(A).


 
2. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 4l6d(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: VNL × 1
4-Hydroxy-3-Methoxybenzoate
PDB code: 4l6d(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: VNL × 1
4-Hydroxy-3-Methoxybenzoate
PDB code: 4l6d(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: VNL × 1
4-Hydroxy-3-Methoxybenzoate
PDB code: 4l6d(A).

 

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