Ligand clusters for UniProt code Q8PYK9

Ligand clusters for Q8PYK9: Deoxyribodipyrimidine photolyase from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)

		Top 6 (of 22) ligand clusters Cluster 1. 2 ligand types 17 ligands Cluster 2. 3 ligand types 8 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 8 ligands Cluster 6. 2 ligand types 7 ligands
Representative protein: 4cdnA

Structures

PDB		Schematic diagram
4cdnA
4cdmA
5o86A
5o8dA
5o8eA
		more ...

Cluster 1 contains 2 ligand types

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Ligand		Description
		1. Ligand: FAD × 10 flavin adenine dinucleotide Flavin-Adenine dinucleotide PDB codes: 2xry(A), 2xrz(A), 4cdm(A), 4cdn(A), 5o86(A), 5o8d(A), 5o8e(A), 5zcw(A),
		2. Ligand: GOL × 7 glycerin Glycerol PDB codes: 2xry(A), 4cdm(A), 4cdn(A), 5o86(A), 5o8d(A), 5o8e(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2xrz(A).
		2. Ligand: SO4 × 4 Sulfate ion PDB codes: 2xry(A), 5o86(A), 5o8d(A), 5o8e(A).
		3. Ligand: FO1 × 3 1-Deoxy-1-(8-Hydroxy-2,4-Dioxo-3,4- Dihydropyrimido[4,5-B]quinolin-10(2h)-Yl)-D- Ribitol PDB codes: 4cdm(A), 4cdn(A),

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4cdn(A).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 4cdn(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 5zcw(A).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 4cdn(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 7 Sulfate ion PDB codes: 2xry(A), 2xrz(A), 4cdm(A), 5o86(A), 5o8d(A), 5o8e(A), 5zcw(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4cdn(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4cdm(A).
		2. Ligand: SO4 × 6 Sulfate ion PDB codes: 2xry(A), 4cdn(A), 5o86(A), 5o8d(A), 5o8e(A).