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EBI
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PDBsum
Ligand clusters for UniProt code Q8DKM3
Ligand clusters for Q8DKM3: Photosystem II protein Y from Thermosynechococcus elongatus (strain BP-1)
3 ligand clusters
Cluster 1.
1 ligand type
8 ligands
Cluster 2.
1 ligand type
8 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 5mx2R
Structures
PDB
Schematic diagram
5mx2
R
5kaf
R
5tis
R
4pj0
R
5kai
R
more ...
Cluster 1 contains 1 ligand type
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Ligand
Description
1. Ligand:
SQD × 8
1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol
PDB codes:
4il6
(R),
4pj0
(R),
5kaf
(R),
5kai
(R),
5mx2
(R),
5tis
(R).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
HEM × 8
Protoporphyrin IX containing fe
PDB codes:
4il6
(R),
4pj0
(R),
5kaf
(R),
5kai
(R),
5mx2
(R),
5tis
(R).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
HTG × 1
Heptyl 1-Thio-Beta-D-Glucopyranoside
PDB code:
4il6
(R).