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Ligand clusters for UniProt code Q84CU3

Ligand clusters for Q84CU3: ADP-ribose pyrophosphatase from Thermus thermophilus

3 ligand clusters
Cluster 1.
7 ligand types
18 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
4 ligands
Representative protein: 1v8mA  
JSmol
 

Structures

PDB   Schematic diagram
1v8mA    
1v8rA    
1v8vA    
1v8tA    
1v8nA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 4
PDB codes: 1v8n(A), 1v8r(A), 1v8t(A), 1v8y(A).

_Mg
 
2. Metal: _MG × 3
PDB codes: 1v8s(A), 1v8u(A), 1v8v(A).


 
3. Ligand: APR × 5
Adenosine-5-Diphosphoribose
PDB codes: 1v8l(A), 1v8m(A), 1v8r(A), 1v8v(A), 1v8y(A).


 
4. Ligand: SO4 × 2
Sulfate ion
PDB codes: 1v8u(A), 1v8w(A).

_Gd
 
5. Metal: _GD × 2
PDB codes: 1v8m(A),


 
6. Ligand: AMP × 1
Adenosine monophosphate
PDB code: 1v8s(A).


 
7. Ligand: R5P × 1
Ribose-5-Phosphate
PDB code: 1v8t(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description

_Gd
 
1. Metal: _GD × 1
PDB code: 1v8m(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 4
PDB codes: 1v8r(A), 1v8t(A), 1v8w(A), 1v8y(A).

 

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