Ligand clusters for UniProt code Q7SI98

Ligand clusters for Q7SI98: Beta-xylanase from Streptomyces olivaceoviridis

		Top 6 (of 16) ligand clusters Cluster 1. 13 ligand types 25 ligands Cluster 2. 12 ligand types 15 ligands Cluster 3. 12 ligand types 19 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 3 ligands
Representative protein: 1isvA

Structures

PDB		Schematic diagram
1isvA
1it0A
1iszA
2d23A
1isxA
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2d1z(A).
		2. Ligand: XYP-XYP × 7 XYP=Beta-D-Xylopyranose. PDB codes: 1isw(A), 1isx(A), 1v6u(A), 1v6v(A), 1v6x(A).
		3. Ligand: XYS-XYS × 5 XYS=Alpha-D-Xylopyranose. PDB codes: 2d20(A), 2d22(A), 2d23(A), 2g3j(A),
		4. Ligand: PO4 × 2 Phosphate ion PDB codes: 2g3i(A), 2g3j(A).
		5. Ligand: XYP × 2 Beta-D-Xylopyranose PDB codes: 1isv(A), 1isw(A).
		6. Ligand: NPO × 1 P-Nitrophenol PDB code: 2d20(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 2d22(A).
		8. Ligand: XYP-XYP-AHR-XYP × 1 XYP=Beta-D-Xylopyranose, AHR=Alpha-L-Arabinofuranose. PDB code: 1v6v(A).
		9. Ligand: XYP-XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 1isx(A).
		10. Ligand: XYP-XYP-XYP-GCV × 1 XYP=Beta-D-Xylopyranose, GCV=4-O-Methyl-Alpha-D-Glucopyranuronic acid. PDB code: 1v6x(A).
		11. Ligand: XYP-XYP-XYP-XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 5gqe(A).
		12. Ligand: XYS-XYP × 1 XYS=Alpha-D-Xylopyranose, XYP=Beta-D-Xylopyranose. PDB code: 5gqd(A).
		13. Ligand: XYS-XYS-XYS-XYS-XYS × 1 XYS=Alpha-D-Xylopyranose. PDB code: 2d24(A).

Cluster 2 contains 12 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2d1z(A), 2d23(A), 5gqd(A).
		2. Ligand: GAL × 1 galactose Beta-D-Galactopyranose PDB code: 1isz(A).
		3. Ligand: XYP-XYP × 2 XYP=Beta-D-Xylopyranose. PDB codes: 1isw(A), 1isx(A).
		4. Ligand: BGC × 1 Beta-D-Glucopyranose PDB code: 1isy(A).
		5. Ligand: BGC-GAL × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 1it0(A).
		6. Ligand: XYP × 1 Beta-D-Xylopyranose PDB code: 1isv(A).
		7. Ligand: XYP-XYP-AHR × 1 XYP=Beta-D-Xylopyranose, AHR=Alpha-L-Arabinofuranose. PDB code: 1v6u(A).
		8. Ligand: XYP-XYP-AHR-XYP × 1 XYP=Beta-D-Xylopyranose, AHR=Alpha-L-Arabinofuranose. PDB code: 1v6v(A).
		9. Ligand: XYP-XYP-GCV × 1 XYP=Beta-D-Xylopyranose, GCV=4-O-Methyl-Alpha-D-Glucopyranuronic acid. PDB code: 1v6w(A).
		10. Ligand: XYP-XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 1v6x(A).
		11. Ligand: XYP-XYP-XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 5gqe(A).
		12. Ligand: XYS-XYS-XYS-XYS × 1 XYS=Alpha-D-Xylopyranose. PDB code: 2d24(A).

Cluster 3 contains 12 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2d1z(A), 2d20(A), 2d22(A), 2d23(A), 5gqd(A).
		2. Ligand: GAL × 1 galactose Beta-D-Galactopyranose PDB code: 1isz(A).
		3. Ligand: XYP × 4 Beta-D-Xylopyranose PDB codes: 1isv(A), 1isw(A), 1isx(A), 1v6u(A).
		4. Ligand: BGC × 1 Beta-D-Glucopyranose PDB code: 1isy(A).
		5. Ligand: BGC-GAL × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 1it0(A).
		6. Ligand: SO4 × 1 Sulfate ion PDB code: 2d22(A).
		7. Ligand: XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 5gqe(A).
		8. Ligand: XYP-XYP-GCV × 1 XYP=Beta-D-Xylopyranose, GCV=4-O-Methyl-Alpha-D-Glucopyranuronic acid. PDB code: 1v6w(A).
		9. Ligand: XYP-XYP-XYP × 1 XYP=Beta-D-Xylopyranose. PDB code: 1v6v(A).
		10. Ligand: XYP-XYP-XYP-GCV × 1 XYP=Beta-D-Xylopyranose, GCV=4-O-Methyl-Alpha-D-Glucopyranuronic acid. PDB code: 1v6x(A).
		11. Ligand: XYS × 1 Alpha-D-Xylopyranose PDB code: 1v6u(A).
		12. Ligand: XYS-XYS × 1 XYS=Alpha-D-Xylopyranose. PDB code: 2d24(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2d1z(A).
		2. Ligand: PO4 × 3 Phosphate ion PDB codes: 2g3i(A), 2g3j(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 2g3i(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 2d24(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2d1z(A), 2d20(A), 5gqd(A).