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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q7N8J0
Ligand clusters for Q7N8J0: Uncharacterized protein from Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Top 6 (of 21) ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
3 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
2 ligand types
5 ligands
Representative protein: 5c9oA
Structures
PDB
Schematic diagram
5c9o
A
5c9p
A
5c9l
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
5c9o
(A),
5c9p
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5c9l
(A).
3. Ligand:
FUC × 1
Alpha-L-Fucopyranose
PDB code:
5c9p
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5c9o
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5c9l
(A).
3. Ligand:
FUC × 1
Alpha-L-Fucopyranose
PDB code:
5c9p
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5c9o
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5c9l
(A).
3. Ligand:
FUC × 1
Alpha-L-Fucopyranose
PDB code:
5c9p
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PG4 × 1
Tetraethylene glycol
PDB code:
5c9l
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
PG4 × 1
Tetraethylene glycol
PDB code:
5c9l
(A).
Cluster 6 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 4
glycerin
Glycerol
PDB codes:
5c9o
(A),
5c9p
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5c9l
(A).