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Ligand clusters for UniProt code Q7BJX9

Ligand clusters for Q7BJX9: UDP-N-acetylglucosamine 4-epimerase from Plesiomonas shigelloides

5 ligand clusters
Cluster 1.
5 ligand types
18 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
4 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 3lu1A  
JSmol
 

Structures

PDB   Schematic diagram
3lu1A    
3ruhA    
3rudA    
3rufA    
3rucA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAD × 9
Nicotinamide-Adenine-Dinucleotide
PDB codes: 3lu1(A), 3ru7(A), 3ru9(A), 3rua(A), 3ruc(A), 3rud(A), 3rue(A), 3ruf(A), 3ruh(A).


 
2. Ligand: UNL × 5
Unknown ligand
PDB codes: 3ru7(A), 3ru9(A), 3rua(A), 3rud(A), 3rue(A).


 
3. Ligand: UD2 × 2
Uridine-Diphosphate-N-Acetylgalactosamine
PDB codes: 3lu1(A), 3ruc(A).


 
4. Ligand: UD6 × 1
[[(2r,3s,4r,5r)-5-[2,4-Bis(oxidanylidene)pyrimidin-1- Yl]-3,4-Bis(oxidanyl)oxolan-2-Yl]methoxy-
Oxidanyl- Phosphoryl] [(2r,3r,4r,5r,6r)-6-(Hydroxymethyl)-4,5- Bis(oxidanyl)-3-(2-
Oxidanylidenepropyl)oxan-2-Yl] hydrogen phosphate
PDB code: 3ruh(A).


 
5. Ligand: UDP × 1
Uridine-5'-Diphosphate
PDB code: 3ruf(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GLY × 2
glycine
PDB codes: 3lu1(A), 3ru7(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 6
Sulfate ion
PDB codes: 3lu1(A), 3ru9(A), 3rua(A), 3ruc(A), 3ruf(A), 3ruh(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 4
Sulfate ion
PDB codes: 3ru7(A), 3ru9(A), 3rua(A), 3ruh(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3ruh(A).

 

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