Ligand clusters for UniProt code Q5UQL3

Ligand clusters for Q5UQL3: Nucleoside diphosphate kinase from Acanthamoeba polyphaga mimivirus

		2 ligand clusters Cluster 1. 12 ligand types 37 ligands Cluster 2. 1 ligand type 1 ligand
Representative protein: 3ejmA

Structures

PDB		Schematic diagram
3ejmA
3fbeA
3eicA
3evwA
3fbbA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: TYD × 1 Thymidine-5'-Diphosphate PDB code: 2b8q(A).
_Mg		2. Metal: _MG × 6 PDB codes: 3evw(A), 3fbc(A), 3fbe(A), 3fcv(A), 3g2x(A), 3gp9(A).
		3. Ligand: TYD × 7 Thymidine-5'-Diphosphate PDB codes: 3ddi(A), 3em1(A), 3evo(A), 3evw(A), 3fbc(A), 3fbf(A), 3g2x(A).
		4. Ligand: GDP × 4 Guanosine-5'-Diphosphate PDB codes: 3dkd(A), 3ejm(A), 3fbe(A), 3gp9(A).
		5. Ligand: SO4 × 4 Sulfate ion PDB codes: 2b8p(A),
		6. Ligand: CDP × 3 Cytidine-5'-Diphosphate PDB codes: 3ee3(A), 3etm(A), 3gpa(A).
		7. Ligand: DGI × 3 2'-Deoxyguanosine-5'-Diphosphate PDB codes: 3b6b(A), 3emt(A), 3ena(A).
		8. Ligand: UDP × 3 Uridine-5'-Diphosphate PDB codes: 3eic(A), 3fbb(A), 3fcw(A).
		9. Ligand: DUD × 2 Deoxyuridine-5'-Diphosphate PDB codes: 3elh(A), 3fcv(A).
		10. Ligand: PO4 × 2 Phosphate ion PDB codes: 3fbc(A), 3gp9(A).
		11. Ligand: CTP × 1 Cytidine-5'-Triphosphate PDB code: 3fc9(A).
		12. Ligand: YYY × 1 Deoxycytidine diphosphate PDB code: 3evm(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 3gpa(A).