Ligand clusters for UniProt code Q5M4H8

Ligand clusters for Q5M4H8: Di-or tripeptide:H+ symporter from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)

		6 ligand clusters Cluster 1. 10 ligand types 17 ligands Cluster 2. 10 ligand types 69 ligands Cluster 3. 6 ligand types 271 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 7 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 6fmrA

Structures

PDB		Schematic diagram
6fmrA
5oxnA
5oxmA
4xnjA
5oxoA
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: PO4 × 4 Phosphate ion PDB codes: 5oxm(A), 5oxp(A), 5oxq(A), 6eia(A).
		2. Ligand: ALA-PHE × 3 PDB codes: 4d2c(A), 5d58(A), 5d59(A).
		3. Ligand: 1PE × 2 Pentaethylene glycol PDB codes: 5oxo(A), 5oxp(A).
		4. Ligand: EPE × 2 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB codes: 5oxq(A), 6eia(A).
		5. Ligand: ALA-ALA-ALA × 1 PDB code: 4d2d(A).
		6. Ligand: ALA-GLN × 1 PDB code: 5oxk(A).
		7. Ligand: ALA-LEU × 1 PDB code: 5oxl(A).
		8. Ligand: ASP-GLU × 1 PDB code: 5oxm(A).
		9. Ligand: PHE-ALA × 1 PDB code: 5oxn(A).
		10. Ligand: PHE-ALA-GLN × 1 PDB code: 6ghj(A).

Cluster 2 contains 10 ligand types

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Ligand		Description
		1. Ligand: CIT × 1 citric acid Citric acid PDB code: 5oxo(A).
		2. Ligand: 78M × 28 (2s)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB codes: 4d2b(A), 4d2c(A), 4d2d(A), 4xni(A), 4xnj(A), 5d58(A), 5d59(A), 5oxm(A), 5oxo(A), 5oxq(A), 6eia(A), 6fmr(A), 6fmy(A), 6yof(A), 6yog(A),
		3. Ligand: 78N × 19 (2r)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB codes: 4d2b(A), 5oxk(A), 5oxl(A), 5oxm(A), 5oxn(A), 5oxo(A), 5oxp(A), 5oxq(A), 6eia(A), 6ghj(A),
		4. Ligand: 1PE × 5 Pentaethylene glycol PDB codes: 5oxk(A), 5oxl(A), 5oxo(A), 5oxq(A), 6ghj(A).
		5. Ligand: PE5 × 5 3,6,9,12,15,18,21,24-Octaoxahexacosan-1-Ol PDB codes: 5d58(A), 5d59(A), 6fmy(A).
		6. Ligand: PO4 × 4 Phosphate ion PDB codes: 5oxm(A), 5oxq(A), 6eia(A), 6ghj(A).
		7. Ligand: 97M × 2 (2r)-2,3-Dihydroxypropyl (9z)-Hexadec-9-Enoate PDB codes: 5d6k(A),
		8. Ligand: PG0 × 2 2-(2-Methoxyethoxy)ethanol PDB codes: 6yof(A), 6yog(A).
		9. Ligand: PGE × 2 Triethylene glycol PDB codes: 6yof(A), 6yog(A).
		10. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 6eia(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: 78M × 136 (2s)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB codes: 4d2b(A), 4d2c(A), 4d2d(A), 4xni(A), 4xnj(A), 5d58(A), 5d59(A), 5oxk(A), 5oxl(A), 5oxm(A), 5oxn(A), 5oxo(A), 5oxp(A), 5oxq(A), 6eia(A), 6fmr(A), 6fmy(A), 6ghj(A), 6yof(A), 6yog(A),
		2. Ligand: 78N × 100 (2r)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB codes: 4d2b(A), 4d2c(A), 4d2d(A), 5oxk(A), 5oxl(A), 5oxm(A), 5oxn(A), 5oxo(A), 5oxp(A), 5oxq(A), 6eia(A), 6ghj(A),
		3. Ligand: PO4 × 24 Phosphate ion PDB codes: 4d2b(A), 4d2c(A), 4d2d(A), 4xni(A), 4xnj(A), 5d58(A), 5d59(A), 5d6k(A), 5oxk(A), 5oxl(A), 5oxm(A), 5oxn(A), 5oxp(A), 5oxq(A), 6eia(A), 6fmr(A), 6fmy(A), 6ghj(A), 6yof(A), 6yog(A).
		4. Ligand: 97M × 6 (2r)-2,3-Dihydroxypropyl (9z)-Hexadec-9-Enoate PDB codes: 5d6k(A),
		5. Ligand: EPE × 4 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB codes: 5oxl(A), 5oxq(A), 6eia(A), 6ghj(A).
		6. Ligand: 97N × 1 (2s)-2,3-Dihydroxypropyl (9z)-Hexadec-9-Enoate PDB code: 5d6k(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1PE × 2 Pentaethylene glycol PDB codes: 5oxl(A), 5oxp(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 7 Phosphate ion PDB codes: 5oxk(A), 5oxl(A), 5oxn(A), 5oxp(A), 5oxq(A), 6eia(A), 6ghj(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Na		1. Metal: _NA × 4 PDB codes: 5oxn(A), 5oxo(A), 5oxq(A), 6ghj(A).