Ligand clusters for UniProt code Q59288

Ligand clusters for Q59288: Chondroitinase-AC from Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3)

		3 ligand clusters Cluster 1. 5 ligand types 5 ligands Cluster 2. 2 ligand types 5 ligands Cluster 3. 1 ligand type 4 ligands
Representative protein: 1cb8A

Structures

PDB		Schematic diagram
1cb8A
1hmwA
1hm3A
1hmuA
1hm2A

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1cb8(A).
		2. Ligand: ASG-GCD × 1 ASG=2-Acetamido-2-Deoxy-4-O-Sulfo-Beta-D-Galactopyranose, GCD=4-Deoxy-Alpha-L-Threo-Hex-4-Enopyranuronic acid. PDB code: 1hmu(A).
		3. Ligand: ASG-IDR-ASG-IDR × 1 ASG=2-Acetamido-2-Deoxy-4-O-Sulfo-Beta-D-Galactopyranose, IDR=Alpha-L-Idopyranuronic acid. PDB code: 1hm2(A).
		4. Ligand: NAG-BDP × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BDP=Beta-D-Glucopyranuronic acid. PDB code: 1hm3(A).
		5. Ligand: NG6-BDP-ASG-GCD × 1 NG6=2-Acetamido-2-Deoxy-6-O-Sulfo-Beta-D-Galactopyranose, BDP=Beta-D-Glucopyranuronic acid, ASG=2-Acetamido-2-Deoxy-4-O-Sulfo-Beta-D-Galactopyranose, GCD=4-Deoxy-Alpha-L-Threo-Hex-4-Enopyranuronic acid. PDB code: 1hmw(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: MAN-GCU-XYP-MXY-RAM × 4 MAN=Alpha-D-Mannopyranose, GCU=Alpha-D-Glucopyranuronic acid, XYP=Beta-D-Xylopyranose, MXY=2-O-Methyl-Beta-L-Fucopyranose, RAM=Alpha-L-Rhamnopyranose. PDB codes: 1hm2(A), 1hm3(A), 1hmu(A), 1hmw(A).
		2. Ligand: MAN-GCU-XYP-MFU-RAM × 1 MAN=Alpha-D-Mannopyranose, GCU=Alpha-D-Glucopyranuronic acid, XYP=Beta-D-Xylopyranose, MFU=Methyl alpha-L-Fucopyranoside, RAM=Alpha-L-Rhamnopyranose. PDB code: 1cb8(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: MAN-GCU-RAM × 4 MAN=Alpha-D-Mannopyranose, GCU=Alpha-D-Glucopyranuronic acid, RAM=Alpha-L-Rhamnopyranose. PDB codes: 1hm2(A), 1hm3(A), 1hmu(A), 1hmw(A).