Ligand clusters for UniProt code Q57834

Ligand clusters for Q57834: Tyrosine--tRNA ligase from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

		Top 6 (of 15) ligand clusters Cluster 1. 28 ligand types 40 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 3 ligands Cluster 5. 1 ligand type 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4nx2A

Structures

PDB		Schematic diagram
4nx2A
1j1uA
4pbrA
2pxhA
3n2yA
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Cluster 1 contains 28 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: TYR × 1 PDB code: 1j1u(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4pbr(A), 4pbt(A).
		3. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 1zh0(A).
		4. Ligand: 4BF × 1 4-Bromo-L-Phenylalanine PDB code: 2ag6(A).
		5. Ligand: 4AF × 1 4-Acetyl-L-Phenylalanine PDB code: 1zh6(A).
		6. Ligand: NAL × 1 Beta-(2-Naphthyl)-Alanine PDB code: 1zh0(A).
		7. Ligand: PBF × 1 Para-(Benzoyl)-Phenylalanine PDB code: 2hgz(A).
		8. Ligand: BP5 × 1 3-(2,2'-Bipyridin-5-Yl)-L-Alanine PDB code: 2pxh(A).
		9. Ligand: BME × 2 Beta-Mercaptoethanol PDB codes: 1zh6(A),
		10. Ligand: NIY × 8 Meta-Nitro-Tyrosine PDB codes: 4nda(A), 6wrk(A), 6wrn(A), 6wrq(A), 6wrt(A),
		11. Ligand: BME × 2 Beta-Mercaptoethanol PDB codes: 3d6u(A), 3d6v(A).
		12. Ligand: 2L7 × 2 4-[(2-Bromo-2-Methylpropanoyl)amino]-L-Phenylalanine PDB codes: 4pbr(A), 4pbs(A).
		13. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 4hk4(A),
		14. Ligand: 1PE × 1 Pentaethylene glycol PDB code: 5l7p(A).
		15. Ligand: 2LQ × 1 4-{[(1r,4e)-Cyclooct-4-En-1-Ylcarbonyl]amino}-L- Phenylalanine PDB code: 4pbt(A).
		16. Ligand: 2LT × 1 3,5-Dichloro-L-Tyrosine PDB code: 4nx2(A).
		17. Ligand: 3YM × 1 3-Methoxy-L-Tyrosine PDB code: 4hpw(A).
		18. Ligand: 4CF × 1 4-Cyano-L-Phenylalanine PDB code: 3qe4(A).
		19. Ligand: 7N8 × 1 4-Borono-L-Phenylalanine PDB code: 5n5u(A).
		20. Ligand: 96Z × 1 (2~{s})-2-Azanyl-3-(2,6-Dihydroazulen-1-Yl)propanoic acid PDB code: 5nsf(B).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: P4G × 1 1-Ethoxy-2-(2-Ethoxyethoxy)ethane PDB code: 4pbt(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4pbr(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4nd6(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4nda(A), 6wrk(A), 6wrq(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4nda(A), 6wrk(A), 6wrq(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5nsf(B).