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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q53WB3
Ligand clusters for Q53WB3: Alpha-ribazole-5'-phosphate phosphatase from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Top 6 (of 7) ligand clusters
Cluster 1.
2 ligand types
9 ligands
Cluster 2.
1 ligand type
12 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
5 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1v37A
Structures
PDB
Schematic diagram
1v37
A
2owd
A
2pa0
A
2p6m
A
2enu
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 8
glycerin
Glycerol
PDB codes:
2p2z
(A),
2p75
(A),
2p77
(A),
2p79
(A),
2p9y
(A),
2pa0
(A),
_Cl
2. Metal:
_CL × 1
PDB code:
2pa0
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 12
glycerin
Glycerol
PDB codes:
1v37
(A),
2enu
(A),
2owd
(A),
2p2z
(A),
2p6m
(A),
2p75
(A),
2p77
(A),
2p79
(A),
2p9f
(A),
2p9y
(A),
2p9z
(A),
2pa0
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
2hia
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
2p2y
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 5
glycerin
Glycerol
PDB codes:
2p6m
(A),
2p79
(A),
2p9f
(A),
2p9z
(A),
2pa0
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
2p75
(A),
2pa0
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
2pa0
(A).