Ligand clusters for UniProt code Q3J170

Ligand clusters for Q3J170: Reaction center protein H chain from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

		Top 6 (of 10) ligand clusters Cluster 1. 4 ligand types 13 ligands Cluster 2. 4 ligand types 14 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 4 ligand types 4 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 3 ligands
Representative protein: 4n7lH

Structures

PDB		Schematic diagram
4n7lH
5lriH
2wx5H
4in5H
4in6H

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 7 glycerin Glycerol PDB codes: 4in5(H), 4in6(H), 4n7l(H),
		2. Ligand: CDL × 4 Cardiolipin PDB codes: 2wx5(H), 4in6(H), 4n7l(H), 5lri(H).
		3. Ligand: DD9 × 1 Nonane PDB code: 5lri(H).
		4. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4in5(H).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 4in5(H), 4in6(H), 4n7l(H),
		2. Ligand: LDA × 6 Lauryl dimethylamine-N-Oxide PDB codes: 2wx5(H), 4in5(H), 4n7l(H), 5lri(H),
		3. Ligand: GGD × 2 Nonadec-10-Enoic acid 2-[3,4-Dihydroxy-6-Hydroxymethyl- 5-(3,4,5-Trihydroxy-6-Hydroxymethyl- Tetrahydro-Pyran- 2-Yloxy)-Tetrahydro-Pyran-2-Yloxy]-1-Octadec-9- Enoyloxymethyl-Ethyl ester PDB codes: 4in6(H), 4n7l(H).
		4. Ligand: DD9 × 1 Nonane PDB code: 5lri(H).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4in6(H).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4in6(H).
__K		2. Metal: __K × 1 PDB code: 4in5(H).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 4in6(H).
_Na		4. Metal: _NA × 1 PDB code: 2wx5(H).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 4in5(H).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2wx5(H), 4in5(H), 4in6(H).