Ligand clusters for UniProt code Q2EEY0

Ligand clusters for Q2EEY0: Toll-like receptor 9 from Equus caballus

		Top 6 (of 14) ligand clusters Cluster 1. 1 ligand type 6 ligands Cluster 2. 2 ligand types 8 ligands Cluster 3. 1 ligand type 6 ligands Cluster 4. 1 ligand type 4 ligands Cluster 5. 1 ligand type 4 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 3wpbA

Structures

PDB		Schematic diagram
3wpbA
3wpdA
5y3kA
5y3lA
5y3jA
		more ...

Cluster 1 contains 1 ligand type

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG-NAG × 6 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3wpb(A), 3wpc(A), 3wpd(A), 5y3j(A), 5y3k(A), 5y3l(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 6 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3wpb(A), 3wpc(A), 3wpd(A), 5y3j(A), 5y3k(A), 5y3l(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 3wpb(A), 3wpd(A).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 6 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3wpb(A), 3wpc(A), 3wpd(A), 5y3j(A), 5y3k(A), 5y3l(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3wpc(A), 5y3j(A), 5y3k(A), 5y3l(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3wpc(A), 5y3j(A), 5y3k(A), 5y3l(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3wpc(A), 5y3j(A), 5y3k(A), 5y3l(A).