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EBI
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PDBsum
Ligand clusters for UniProt code Q1LDT6
Ligand clusters for Q1LDT6: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
Top 6 (of 38) ligand clusters
Cluster 1.
1 ligand type
1 ligand
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 5f15A
Structures
PDB
Schematic diagram
5f15
A
Cluster 1 contains 1 ligand type
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Ligand
Description
1. Ligand:
5TR × 1
[(2~{e},6~{e},10~{e},14~{e},18~{z},22~{e},26~{z}, 30~{e},34~{e},38~{e})-
3,7,11,15,19,23,27,31,35,39,43- Undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34, 38,42-
Undecaenyl] dihydrogen phosphate
PDB code:
5f15
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code:
5f15
(A).
2. Ligand:
MPG × 1
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB code:
5f15
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
MPG × 1
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB code:
5f15
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
5f15
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes:
5f15
(A),
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes:
5f15
(A),
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes:
5f15
(A),