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Ligand clusters for UniProt code Q1LDT6

Ligand clusters for Q1LDT6: 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)

Top 6 (of 38) ligand clusters
Cluster 1.
1 ligand type
1 ligand
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 5f15A  
JSmol
 

Structures

PDB   Schematic diagram
5f15A    

 

 Cluster 1 contains 1 ligand type

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Ligand Description


 
1. Ligand: 5TR × 1
[(2~{e},6~{e},10~{e},14~{e},18~{z},22~{e},26~{z}, 30~{e},34~{e},38~{e})-
3,7,11,15,19,23,27,31,35,39,43- Undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34, 38,42-
Undecaenyl] dihydrogen phosphate
PDB code: 5f15(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 5f15(A).


 
2. Ligand: MPG × 1
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB code: 5f15(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: MPG × 1
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB code: 5f15(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 5f15(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes: 5f15(A),

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes: 5f15(A),

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: MPG × 2
[(Z)-Octadec-9-Enyl] (2r)-2,3-Bis(oxidanyl)propanoate
PDB codes: 5f15(A),

 

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